View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9129_low_12 (Length: 352)

Name: NF9129_low_12
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9129_low_12
NF9129_low_12
[»] chr2 (3 HSPs)
chr2 (1-290)||(16287187-16287473)
chr2 (1-139)||(36400663-36400801)
chr2 (286-339)||(16287153-16287206)
[»] chr6 (3 HSPs)
chr6 (1-262)||(3297160-3297421)
chr6 (62-262)||(18971093-18971294)
chr6 (62-214)||(24395380-24395532)
[»] scaffold0074 (1 HSPs)
scaffold0074 (62-214)||(25465-25617)
[»] chr3 (1 HSPs)
chr3 (58-231)||(10926801-10926973)
[»] chr8 (1 HSPs)
chr8 (58-218)||(38921399-38921559)
[»] chr5 (2 HSPs)
chr5 (61-233)||(16160037-16160209)
chr5 (130-230)||(41777620-41777720)
[»] chr4 (1 HSPs)
chr4 (130-230)||(39984236-39984336)
[»] chr7 (1 HSPs)
chr7 (107-196)||(47801045-47801134)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 16287473 - 16287187
Alignment:
Q  1 ttccgcacattagaccataattgactgaaaatactacaatgtnnnnnnnggtgtgaagccgattcaatgtcatcacagccagctgcacacgcaccatccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||  ||||||||||||||||||||| ||||||||||| ||||||||||    
T  16287473 ttccgcacattagaccataattgactgaaaatactacaatgtaaaaaaaggtgt--agccgattcaatgtcatcacaaccagctgcacatgcaccatccg 16287376  T
Q  101 ttggaagaagaataccccgccgcactagattatctttagtcggaagccgatgtcaaagtagtcgccaaaccaacaaagacaccttagaaggaatattctt 200  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  16287375 ttggaagaagaataccccgccgctctagattgtctttagtcggaagccgatgtcgaagtagtcgtcaaaccaacaaagacaccttagaaggaatattctt 16287276  T
Q  201 aaaccaaatatcatcgacccgaaacctgtctgaactagcgctgtggtagtaatatagtgatatgctttcgtaactaaaaaattgataact 290  Q
    ||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16287275 aaacc-aatatcatcaacccgagacctgtctgaactagcactgtggtagtaatatagtgatatgctttcgtaactaaaaaagtgataact 16287187  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 36400663 - 36400801
Alignment:
Q  1 ttccgcacattagaccataattgactgaaaatactacaatgtnnnnnnnggtgtgaagccgattcaatgtcatcacagccagctgcacacgcaccatccg 100  Q
    ||||||||||||||||| | |||||| ||| ||  |||||||       ||||||| |||||||| |||| |||||| |||||||||||||||||||| |    
T  36400663 ttccgcacattagaccacacttgactaaaagtaacacaatgtaaaaaaaggtgtgaggccgattctatgttatcacacccagctgcacacgcaccatctg 36400762  T
Q  101 ttggaagaagaataccccgccgcactagattatctttag 139  Q
    ||||||| |||||||||| || ||| ||||| |||||||    
T  36400763 ttggaagcagaatacccctcctcacgagattgtctttag 36400801  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 16287206 - 16287153
Alignment:
Q  286 taactaaaaaagtgataacttctcacctatttatttttctttaatgagatattt 339  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16287206 taactaaaaaagtgataacttgtcacctatttatttttctttaatgagatattt 16287153  T

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Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3297160 - 3297421
Alignment:
Q  1 ttccgcacattagaccataattgactgaaaatactacaatgtnnnnnnnggtgtgaagccgattcaatgtcatcacagccagctgcacacgcaccatccg 100  Q
    ||||||||||||||||| |||||||||||| || ||||||||       | |||||| | ||||||||||||||||| |||||||| |||||||||||||    
T  3297160 ttccgcacattagaccacaattgactgaaagtaatacaatgtaaaaaaagatgtgaaactgattcaatgtcatcacaaccagctgcccacgcaccatccg 3297259  T
Q  101 ttggaagaagaataccccgccgcactagattatctttagtcggaagccgatgtcaaagtagtcgccaaaccaacaaagacaccttagaaggaatattctt 200  Q
    ||||||||||||||| | || |||| | ||| |||||||| |||| ||| | | || |||| ||||||||||||||||||||||| |||||||||| |||    
T  3297260 ttggaagaagaatactctgctgcaccatattgtctttagttggaaaccgttttgaa-gtagacgccaaaccaacaaagacaccttggaaggaatatgctt 3297358  T
Q  201 aaaccaaatatcatcgacccgaaacctgtctgaactagcgc-tgtggtagtaatatagtgata 262  Q
      ||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||||||    
T  3297359 tcaccaaatatcatcaacccgagacctgtctgaactagcacatgtggtagtaatatagtgata 3297421  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 262
Target Start/End: Original strand, 18971093 - 18971294
Alignment:
Q  62 attcaatgtcatcacagccagctgcacacgcaccatccgttggaagaagaataccccgccgcactagattatctttagtcggaagccgatgtcaaagtag 161  Q
    |||| ||||||||||| ||||| ||||| |||||  || |||||||||||||||||||| |||| | ||| |||||||| | |||| |||  | ||| ||    
T  18971093 attcgatgtcatcacaaccagccgcacatgcaccgcccattggaagaagaataccccgctgcaccatattgtctttagtagaaagctgattgcgaaggag 18971192  T
Q  162 tcgccaaaccaacaaagacaccttagaaggaatattcttaaaccaaatatcatcgacccgaaacctgtctgaactagcgc-tgtggtagtaatatagtga 260  Q
     ||||| ||||| |||||||||||||||||||||| ||||||| ||| |||||  ||| || | ||||||||| || | | |||||||||||||||||||    
T  18971193 acgccacaccaataaagacaccttagaaggaatatgcttaaacgaaacatcattaacctgagatctgtctgaaataacacttgtggtagtaatatagtga 18971292  T
Q  261 ta 262  Q
    ||    
T  18971293 ta 18971294  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 24395532 - 24395380
Alignment:
Q  62 attcaatgtcatcacagccagctgcacacgcaccatccgttggaagaagaataccccgccgcactagattatctttagtcggaagccgatgtcaaagtag 161  Q
    |||| ||||||||||| ||||| ||||| |||||  | ||||||||||||||||||||| |||| | ||| |||||||| ||||||| ||  | ||| ||    
T  24395532 attcgatgtcatcacaaccagccgcacatgcacctcctgttggaagaagaataccccgctgcaccatattgtctttagtaggaagccaattgcgaaggag 24395433  T
Q  162 tcgccaaaccaacaaagacaccttagaaggaatattcttaaaccaaatatcat 214  Q
     ||||  ||||| ||||||||||| || || |||| ||||||||||| |||||    
T  24395432 acgccccaccaataaagacaccttggatgggatatgcttaaaccaaacatcat 24395380  T

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Target: scaffold0074 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 25617 - 25465
Alignment:
Q  62 attcaatgtcatcacagccagctgcacacgcaccatccgttggaagaagaataccccgccgcactagattatctttagtcggaagccgatgtcaaagtag 161  Q
    |||| ||||||||||| ||||| ||||| |||||  ||||||||||||||||||||||| |||| | ||| |||||||| ||||||||||  | ||| ||    
T  25617 attcgatgtcatcacaaccagccgcacatgcaccgcccgttggaagaagaataccccgctgcaccatattgtctttagtaggaagccgattgcgaaggag 25518  T
Q  162 tcgccaaaccaacaaagacaccttagaaggaatattcttaaaccaaatatcat 214  Q
     ||||| ||||| |||||||| || |||||||||| ||||||||||| |||||    
T  25517 acgccacaccaataaagacacattggaaggaatatgcttaaaccaaacatcat 25465  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 10926973 - 10926801
Alignment:
Q  58 gccgattcaatgtcatcacagccagctgcacacgcaccatccgttggaagaagaataccccgccgcactagattatctttagtcggaagccgatgtcaaa 157  Q
    |||||||||||||  ||||| |||||  |||| || || |||||||||||||||||||||| || ||| ||||||||| | || |||| |||||  | ||    
T  10926973 gccgattcaatgtt-tcacaaccagccacacaagctccgtccgttggaagaagaatacccctccacaccagattatctcttgttggaacccgattacgaa 10926875  T
Q  158 gtagtcgccaaaccaacaaagacaccttagaaggaatattcttaaaccaaatatcatcgacccgaaacctgtct 231  Q
    | || |||||  |||| |||||||||||  ||||||||| ||| ||||||| |||||||||  || ||||||||    
T  10926874 gaagacgccacgccaataaagacacctttaaaggaatatgcttgaaccaaacatcatcgacttgagacctgtct 10926801  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 38921399 - 38921559
Alignment:
Q  58 gccgattcaatgtcatcacagccagctgcacacgcaccatccgttggaagaagaataccccgccgcactagattatctttagtcggaagccgatgtcaaa 157  Q
    |||||||||||||| |||||  ||||  |||| || ||  |||||||||||||||||||||  ||||| ||||| ||| | || |||| ||| |  | ||    
T  38921399 gccgattcaatgtcttcacaatcagccacacaagctccgcccgttggaagaagaataccccttcgcaccagattgtctcttgttggaacccggttacgaa 38921498  T
Q  158 gtagtcgccaaaccaacaaagacaccttagaaggaatattcttaaaccaaatatcatcgac 218  Q
    | || |||||  |||| ||||| ||||| |||||||||| ||| ||||||| |||||||||    
T  38921499 gaagacgccacgccaataaagatacctttgaaggaatatgcttgaaccaaacatcatcgac 38921559  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 16160209 - 16160037
Alignment:
Q  61 gattcaatgtcatcacagccagctgcacacgcaccatccgttggaagaagaataccccgccgcactagattatctttagtcggaagccgatgtcaaagta 160  Q
    |||||||||| |||||| || ||| ||||||   | ||||||||||||||||| |||||  | ||||| || |||||||| |||||||  |  | ||| |    
T  16160209 gattcaatgtgatcacacccggctacacacgtcgcgtccgttggaagaagaatgccccgatgtactaggttgtctttagtaggaagcctgttgcgaagga 16160110  T
Q  161 gtcgccaaaccaacaaagacaccttagaaggaatattcttaaaccaaatatcatcgacccgaaacctgtctga 233  Q
    | ||||| | ||||| ||||||||| ||||| |||||||||  ||| | |||||| ||| || ||||||||||    
T  16160109 gacgccacaacaacagagacacctttgaagggatattcttatgccacacatcatcaaccagagacctgtctga 16160037  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 41777720 - 41777620
Alignment:
Q  130 ttatctttagtcggaagccgatgtcaaagtagtcgccaaaccaacaaagacaccttagaaggaatattcttaaaccaaatatcatcgacccgaaacctgt 229  Q
    ||||||||||| ||||||||||  | ||| || || || ||||| |||||||||||  | ||||||| |||||||||||||||| | ||| || ||||||    
T  41777720 ttatctttagtaggaagccgattgcgaaggagacgtcacaccaataaagacacctttaacggaatatacttaaaccaaatatcaacaacctgagacctgt 41777621  T
Q  230 c 230  Q
    |    
T  41777620 c 41777620  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 39984336 - 39984236
Alignment:
Q  130 ttatctttagtcggaagccgatgtcaaagtagtcgccaaaccaacaaagacaccttagaaggaatattcttaaaccaaatatcatcgacccgaaacctgt 229  Q
    ||||||||||| ||||||||||  | ||| || || || ||||| |||||||||||  | ||||||| ||||||||||| |||||| ||| || ||||||    
T  39984336 ttatctttagtaggaagccgattgcgaaggagacgacacaccaataaagacacctttaacggaatatacttaaaccaaacatcatcaacctgagacctgt 39984237  T
Q  230 c 230  Q
    |    
T  39984236 c 39984236  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 47801045 - 47801134
Alignment:
Q  107 gaagaataccccgccgcactagattatctttagtcggaagccgatgtcaaagtagtcgccaaaccaacaaagacaccttagaaggaatat 196  Q
    |||||| |||||||||||||| ||||||||| | |||||| | ||  | ||| ||||||||| |||| | ||||||||| ||||| ||||    
T  47801045 gaagaacaccccgccgcactaaattatctttcgccggaagtctattgcgaaggagtcgccaagccaagagagacacctttgaagggatat 47801134  T

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