View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9129_low_13 (Length: 307)

Name: NF9129_low_13
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9129_low_13
NF9129_low_13
[»] chr3 (1 HSPs)
chr3 (10-307)||(40675240-40675537)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 40675537 - 40675240
Alignment:
Q  10 aagcagagaggaatgttacgttccattttgccacaaatggtgaacgtggatggagtatttggtaccaccatggcactttcctacgtaaagagaatgattt 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40675537 aagcatagaggaatgttacgttccattttgccacaaatggtgaacgtggatggagtatttggtaccaccatggcactttcttacgtaaagagaatgattt 40675438  T
Q  110 tggaaaacggctataaaaatgagatgaagatgataaagcaaattgttgtaactctctattcatctttatttttaattacttaattaattgttttctaact 209  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675437 tggaaaacggctataaaaatgagatgaagatgatactgcaaattgttgtaactctctattcatctttatttttaattacttaattaattgttttctaact 40675338  T
Q  210 acatgtctctaatcaccggaaaatgtgcaatgtcaccttaatgttcatggttgctgcaaaattcatggagaccaaagagaaggagagagaaagtaaaa 307  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675337 acatgtctcaaatcaccggaaaatgtgcaatgtcaccttaatgttcatggttgctgcaaaattcatggagaccaaagagaaggagagagaaagtaaaa 40675240  T

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