View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9129_low_3 (Length: 620)

Name: NF9129_low_3
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9129_low_3
NF9129_low_3
[»] chr2 (7 HSPs)
chr2 (88-518)||(34608449-34608876)
chr2 (517-610)||(34608922-34609015)
chr2 (18-88)||(34608321-34608391)
chr2 (425-479)||(25770411-25770465)
chr2 (425-480)||(25780906-25780961)
chr2 (297-370)||(34604757-34604830)
chr2 (425-478)||(41101147-41101200)
[»] chr1 (3 HSPs)
chr1 (416-478)||(5270141-5270203)
chr1 (292-383)||(27913271-27913361)
chr1 (444-480)||(731936-731972)
[»] chr6 (2 HSPs)
chr6 (425-478)||(24359197-24359250)
chr6 (425-479)||(2038317-2038371)
[»] chr7 (4 HSPs)
chr7 (406-478)||(1295565-1295637)
chr7 (416-464)||(16984337-16984385)
chr7 (425-460)||(37333601-37333636)
chr7 (431-477)||(28065608-28065654)
[»] chr4 (7 HSPs)
chr4 (406-479)||(14043947-14044020)
chr4 (425-478)||(17115921-17115974)
chr4 (416-478)||(49159063-49159125)
chr4 (425-478)||(542286-542338)
chr4 (433-470)||(23125491-23125528)
chr4 (406-478)||(4787072-4787144)
chr4 (425-477)||(18862402-18862454)
[»] chr5 (5 HSPs)
chr5 (430-478)||(19747406-19747454)
chr5 (430-480)||(40294644-40294694)
chr5 (301-405)||(23593619-23593724)
chr5 (330-384)||(16321510-16321564)
chr5 (425-478)||(22858539-22858592)
[»] chr3 (1 HSPs)
chr3 (431-479)||(44894196-44894244)
[»] chr8 (2 HSPs)
chr8 (425-471)||(32158712-32158758)
chr8 (425-478)||(15892036-15892089)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 88 - 518
Target Start/End: Original strand, 34608449 - 34608876
Alignment:
Q  88 ccatagttgttatgctcacttttaaatcttttgttttcgtacaagttaatcaagtccaagaaatgtttgatcattgatagttgtagtgccttggtaaatg 187  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34608449 ccatcgttgttatgctcgcttttaaatcttttgttttcgtacaagttaatcaagtccaagaaatgtttgatcattgatagttgtagtgccttggtaaatg 34608548  T
Q  188 aatttgaaagattaaaaaatgatatggttggtctgagaggatgattattgagctgcttagatatgccgcctattgaggttgatatgtcgatatgcatgtc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  34608549 aatttgaaagattaaaaaatgatatggttggtctgagaggatgatt---gagctgcttagatatgccgcctattgaggttgatatgccgatatgcatgtt 34608645  T
Q  288 gtctgcctggttctgctgaactatggtgaggtgataattcctgtgaagttggttgatcgtcatcccccagtgagacgaagggggttgtgtacctgcaaat 387  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||    
T  34608646 gtctgcctggttctgctgaattgtggtgaggtgatgattcctgtgaagttggttgatcgtcatcccctagtgagacgaaggggattgtatacctgcaaat 34608745  T
Q  388 gcttcaacgtccaagtaattaactcgtgcagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattcatatttaat 487  Q
    ||||||||||||||||||||||||||  |||||||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  34608746 gcttcaacgtccaagtaattaactcgcacagggatatttttggaatttcagttgggaataagcaaaatgtgttgggtaaagagcaaaattcatatttaat 34608845  T
Q  488 ggtcaattttgtccccttgggcccataagca 518  Q
    |||||||||||||||||||||||||| ||||    
T  34608846 ggtcaattttgtccccttgggcccatgagca 34608876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 517 - 610
Target Start/End: Original strand, 34608922 - 34609015
Alignment:
Q  517 cacttaaaaccctagattatgtttctttctttgttagggcaaatagaaaacaacaacaatggttcagcatagcattggagaaacaccaccaaac 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34608922 cacttaaaaccctagattatgtttctttctttgttagggcaaatagaaaacaacaacaatggttcagcatagcattggagaaacaccaccaaac 34609015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 34608321 - 34608391
Alignment:
Q  18 gtaattgacttgtgctcccagatgtagcaacatttggatgctccagagtgctgcaacaccttgcttgcatc 88  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34608321 gtaattgacttgtgatcccagatgtagcaacatttggatgctccagagtgctgcaacaccttgcttgcatc 34608391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 25770411 - 25770465
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 479  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25770411 ttttagaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcagaattca 25770465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 25780906 - 25780961
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattcat 480  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| |||| |||||||    
T  25780906 ttttgaaatttcagttggaaatgagcaaaatgtgttgggtaaatagcacaattcat 25780961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 34604757 - 34604830
Alignment:
Q  297 gttctgctgaactatggtgaggtgataattcctgtgaagttggttgatcgtcatcccccagtgagacgaagggg 370  Q
    |||||| |||||| |||||||||||| ||| |  ||||||||||||||||||||| ||  ||||||||||||||    
T  34604757 gttctgatgaactgtggtgaggtgatgattacgatgaagttggttgatcgtcatctcctggtgagacgaagggg 34604830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 41101200 - 41101147
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||| |||| |||||    
T  41101200 ttttagaatttcaattggaaacgagcaaaatgtgttgggtaaatagcataattc 41101147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 478
Target Start/End: Original strand, 5270141 - 5270203
Alignment:
Q  416 cagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    ||||| || ||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  5270141 caggggtatttttggaatttcagttggaaatgaacaaaatgtgttgggtaaagagcaaaattc 5270203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 27913361 - 27913271
Alignment:
Q  292 gcctggttctgctgaactatggtgaggtgataattcctgtgaagttggttgatcgtcatcccccagtgagacgaagggggttgtgtacctgc 383  Q
    ||||||||||| ||| || ||||| |||||| |||   |||| | ||| |||||||||||||||  ||||||||||||||||||||||||||    
T  27913361 gcctggttctgttgagctgtggtggggtgatgattatggtga-gatgggtgatcgtcatcccccgatgagacgaagggggttgtgtacctgc 27913271  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 480
Target Start/End: Complemental strand, 731972 - 731936
Alignment:
Q  444 aatgagcaaaatgtgttgggtaaagagcaaaattcat 480  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  731972 aatgagcaaaatgttttgagtaaagagcaaaattcat 731936  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 24359197 - 24359250
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  24359197 ttttggaatttcagttgaaaatgagaaaaatgtgttgggtaaagagcagaattc 24359250  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 479
Target Start/End: Complemental strand, 2038371 - 2038317
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 479  Q
    |||||||||||||||||| ||| || ||||| |||| ||||||||||| ||||||    
T  2038371 ttttggaatttcagttgagaattagtaaaatatgtttggtaaagagcagaattca 2038317  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 406 - 478
Target Start/End: Original strand, 1295565 - 1295637
Alignment:
Q  406 ttaactcgtgcagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    ||||||| ||||||| || ||||| ||||||||||   ||||||||||||||||||||||||||||| |||||    
T  1295565 ttaactcatgcaggggtatttttgaaatttcagttaggaatgagcaaaatgtgttgggtaaagagcagaattc 1295637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 16984385 - 16984337
Alignment:
Q  416 cagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggt 464  Q
    |||||||| ||||||||||| |||||  |||||||||||||||||||||    
T  16984385 cagggataattttggaattttagttgggaatgagcaaaatgtgttgggt 16984337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 37333636 - 37333601
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgtt 460  Q
    |||| |||||||||||||||||||||||||||||||    
T  37333636 tttttgaatttcagttgaaaatgagcaaaatgtgtt 37333601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 28065654 - 28065608
Alignment:
Q  431 aatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaatt 477  Q
    |||||||||  |||||||| |||||||||||||||||||||| ||||    
T  28065654 aatttcagtaaaaaatgagtaaaatgtgttgggtaaagagcagaatt 28065608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 479
Target Start/End: Complemental strand, 14044020 - 14043947
Alignment:
Q  406 ttaactcgtgcagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 479  Q
    ||||||| || ||||| | ||| |||||||||||||  ||||||||||||||||| ||||||||||| ||||||    
T  14044020 ttaactcatgtagggacattttaggaatttcagttgggaatgagcaaaatgtgtttggtaaagagcagaattca 14043947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 17115921 - 17115974
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  17115921 tttttgaatttcagttgagaatgagcaaaatgtgttaggtaaagagcagaattc 17115974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 478
Target Start/End: Complemental strand, 49159125 - 49159063
Alignment:
Q  416 cagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    ||||| || ||||||||||| ||||   ||||||||||||||||||||||||||||| |||||    
T  49159125 caggggtatttttggaattttagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 49159063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 542338 - 542286
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    |||||||||||||||||| || ||||||||| |||||||||| |||||||||||    
T  542338 ttttggaatttcagttgagaa-gagcaaaatatgttgggtaatgagcaaaattc 542286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 470
Target Start/End: Original strand, 23125491 - 23125528
Alignment:
Q  433 tttcagttgaaaatgagcaaaatgtgttgggtaaagag 470  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  23125491 tttcagttgagaatgagtaaaatgtgttgggtaaagag 23125528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 478
Target Start/End: Complemental strand, 4787144 - 4787072
Alignment:
Q  406 ttaactcgtgcagggatagttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    ||||||| ||||||  || ||||| |||| || |||| |||||||||||| |||| ||||||||||| |||||    
T  4787144 ttaactcatgcaggagtatttttgaaattgcacttgagaatgagcaaaatatgttcggtaaagagcagaattc 4787072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 18862402 - 18862454
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaatt 477  Q
    ||||| |||||||||||  ||||||||||||||||| ||| ||||||| ||||    
T  18862402 ttttgaaatttcagttgggaatgagcaaaatgtgttaggttaagagcagaatt 18862454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 19747454 - 19747406
Alignment:
Q  430 gaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    |||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  19747454 gaatttcagttgaaaatgagcaaaatatgtcgggtaaagagcataattc 19747406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 40294644 - 40294694
Alignment:
Q  430 gaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattcat 480  Q
    |||||||||||||||| || ||||||  |||||||||||||||||||||||    
T  40294644 gaatttcagttgaaaacgaacaaaatcagttgggtaaagagcaaaattcat 40294694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 405
Target Start/End: Original strand, 23593619 - 23593724
Alignment:
Q  301 tgctgaactatggtgaggtgataattcctgtgaagttggttgatcgtcatcccccagtgagacgaa-gggggttgtgtacctgcaaatgcttcaacgtcc 399  Q
    ||||||||| ||||| | |||||||||  |||| ||||||||||| | | || | ||||| ||||| |||||||||||||||||| | |||| |||| ||    
T  23593619 tgctgaactgtggtgggatgataattctagtgaggttggttgatctttagcctctagtgaaacgaaggggggttgtgtacctgcacacgctttaacgccc 23593718  T
Q  400 aagtaa 405  Q
    ||||||    
T  23593719 aagtaa 23593724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 16321564 - 16321510
Alignment:
Q  330 gtgaagttggttgatcgtcatcccccagtgagacgaagggggttgtgtacctgca 384  Q
    |||| ||||||||||||||| || || ||||||||||| |||||||||| |||||    
T  16321564 gtgaggttggttgatcgtcagcctcccgtgagacgaagagggttgtgtatctgca 16321510  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 22858539 - 22858592
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    |||||| ||||||||||  ||||| ||||| ||||||||||||||||| |||||    
T  22858539 ttttgggatttcagttgggaatgaacaaaacgtgttgggtaaagagcataattc 22858592  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 44894196 - 44894244
Alignment:
Q  431 aatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattca 479  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  44894196 aatttcaattgaaaatgagcaaaatgtgttgtataaagagcaaaattca 44894244  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 32158712 - 32158758
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagc 471  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||    
T  32158712 ttttggaatttcggttggcaatgagcaaaatgtgttgggtaaagagc 32158758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 15892089 - 15892036
Alignment:
Q  425 ttttggaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcaaaattc 478  Q
    |||||||||||||||||  |||||||| ||||||||||||||||| || |||||    
T  15892089 ttttggaatttcagttgggaatgagcataatgtgttgggtaaagaacataattc 15892036  T

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