View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9129_low_4 (Length: 541)
Name: NF9129_low_4
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9129_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 32408015 - 32407491
Alignment:
| Q |
1 |
aaaaaggaggtagaaaatcatatcagaaacgtgacttcaacaataatctatcggtaataagttgttttcatgtagtgtcacgtttgatgtgatatgatct |
100 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32408015 |
aaaaaggaggtagaaaatcatttcagaaacatgacttcaacaataatctatcggtaataagttgttttcttgtagtgtcacgtttgatgtgatatgatct |
32407916 |
T |
|
| Q |
101 |
ttaaaaacatttataagtggaagatatctcttaacaattatgtttgtcgtgtcgagttaattctaacccaaattttaggactaattttcattgagaagct |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32407915 |
ttaaaaacatttataagtggaagatatctcttaccaattatgtttgtcgtgtcgagttaattctaacccaaattttaggactaattttcattgagaagct |
32407816 |
T |
|
| Q |
201 |
tctataaactataaattaatctaaatcctaagactaatttgattagtttttcttgcttttcgtcttttgaaggctggaattccagatggagtactcaatg |
300 |
Q |
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| T |
32407815 |
tctataaactataaattaatctaaatcccaagactaatttgattagtttttcttgcttttcgtcttttgaaggctggaattccagatggagtgctcaatg |
32407716 |
T |
|
| Q |
301 |
tagtacctggatttggtgcaactgcaggagctgcaataagctcacacatggacattgataaggtaaattttaaatatcaagcataagcatttgaaaatat |
400 |
Q |
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| T |
32407715 |
tagtacctggatttggtgcaactgcaggagctgcaataagctcacacatggacattgataaggtaaattttaaatatcaagcataagcatttgaaaatat |
32407616 |
T |
|
| Q |
401 |
cacgattcaaaataatataagactaatagaattgctttgattgtgcttgtgcaggttagttttaccggttcaacagaagtaggacgcgaaataatggtat |
500 |
Q |
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| T |
32407615 |
cacgattcaaaagaatataagactaatagaattgctttgattgtgcttgtgcaggttagttttaccggttcaacagaagtaggacgcgaaataatggtat |
32407516 |
T |
|
| Q |
501 |
ctgcagctagaagtaatttgaaacc |
525 |
Q |
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| T |
32407515 |
ctgcagctagaagtaatttgaaacc |
32407491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 271 - 359
Target Start/End: Original strand, 32434076 - 32434164
Alignment:
| Q |
271 |
aggctggaattccagatggagtactcaatgtagtacctggatttggtgcaactgcaggagctgcaataagctcacacatggacattgat |
359 |
Q |
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||||||| |||||||||||||| ||||||||| | || ||||||||| ||||||| ||||||||||||| |||||| |||||||||||| |
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| T |
32434076 |
aggctggtattccagatggagtgctcaatgtactgccaggatttggttcaactgctggagctgcaataacctcacatatggacattgat |
32434164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 271 - 359
Target Start/End: Original strand, 43619492 - 43619580
Alignment:
| Q |
271 |
aggctggaattccagatggagtactcaatgtagtacctggatttggtgcaactgcaggagctgcaataagctcacacatggacattgat |
359 |
Q |
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|||||||||| ||||||||||| ||||||||||||| |||||||| || ||||| || |||||| | ||||||||||||||||||||| |
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| T |
43619492 |
aggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgat |
43619580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 43626808 - 43626893
Alignment:
| Q |
270 |
aaggctggaattccagatggagtactcaatgtagtacctggatttggtgcaactgcaggagctgcaataagctcacacatggacat |
355 |
Q |
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|||||||| || ||| ||||||| || ||||||||||| ||||||||| ||||||| || |||||||| ||||||||||||||||| |
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| T |
43626808 |
aaggctgggatcccaaatggagtgctgaatgtagtacccggatttggtccaactgctggtgctgcaatcagctcacacatggacat |
43626893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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