View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9129_low_6 (Length: 443)
Name: NF9129_low_6
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9129_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 13556822 - 13557253
Alignment:
| Q |
1 |
agatctcaattacccttgaaattttaaatatcagaaccttgtatagttatatttattgcattcatctagagaccttaacctagcaaaatttgatttccac |
100 |
Q |
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| T |
13556822 |
agatctcaattacccttgaaattttaaatatcagaaccttgtatagttatatttattgcattcatctagagaccttaacctagcaaaatttgatttccac |
13556921 |
T |
|
| Q |
101 |
aa---------gtgcttaagataattatagctcaatgcaacttaaactataccttctggaattttgccaccagcaagatgtacaatactaattatgacaa |
191 |
Q |
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| T |
13556922 |
aagttcaacaagtgcttaagataattatagctcaatgcaacttaaactataccttctggaattttgccaccagcaagatgtacaatactaattatgacaa |
13557021 |
T |
|
| Q |
192 |
acgtgaaaccagacatgtgcgctgaattcgcatccacaacatatttttcatataaatcagaaggaagtcgactaatgagaatatatgatttggcatccgc |
291 |
Q |
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| T |
13557022 |
acgtgaaaccagacatgtgcgctgaattcgcatccacaacatatttttcatataaatcagaaggaagtcgactaatgagaatatatgatttggcatccgc |
13557121 |
T |
|
| Q |
292 |
accacctgaaagatcacatgtcataagcttataatgagagaaaaagtaaatggaaacaaggaaaacacagttgaaaaactctaaggaatgcaaacatatc |
391 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13557122 |
actacctgaaagatcacatgtcataagcttataatgagagaaaaagtaaat-gaaacaaggaaaacacagttgaaaaactctaaggaatgcaaacatatc |
13557220 |
T |
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| Q |
392 |
tttacaagtaaaaagcaacgtagaacacattta |
424 |
Q |
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| T |
13557221 |
tttacaagtaaaaagcaacgtagaacacattta |
13557253 |
T |
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