View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9129_low_9 (Length: 368)
Name: NF9129_low_9
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9129_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 38 - 344
Target Start/End: Complemental strand, 33050290 - 33049975
Alignment:
| Q |
38 |
ccttggaactttcttggacttgcattcagatacataatgcccccattttttaagattatatcattgaatctcattctttctcgaagctttctttattttt |
137 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33050290 |
ccttggaactttcttggacttgaattcagatacataatgcccccattttttaagattatatcattgaatctccttctttctcgaagctttctttattt-- |
33050193 |
T |
|
| Q |
138 |
acttgaaccttcatcattcttggaagcattatcattccaataattctttcctttcttgtatttccttttatttgtatattgagcttgcaaagcttgatct |
237 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050192 |
-----aaccttaatcattcttggaagctttatcattccaataattctttcctttcttgcatttccttttatttgtatattgagcttgcaaagcttgatct |
33050098 |
T |
|
| Q |
238 |
aatgcaaaacctttggatttttctttgttcctatc----------------agtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaat |
321 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050097 |
aatgcagaacctttggatttttctttgttcctatcggttaacctcaattcatgtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaat |
33049998 |
T |
|
| Q |
322 |
ctttggattcttctaagaccaca |
344 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33049997 |
ctttggattcttctaagaccaca |
33049975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 28452125 - 28452201
Alignment:
| Q |
276 |
gcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatg |
352 |
Q |
| |
|
|||||||| ||||| || | |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28452125 |
gcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaagactacaacaatatg |
28452201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 28451893 - 28451933
Alignment:
| Q |
40 |
ttggaactttcttggacttgcattcagatacataatgcccc |
80 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
28451893 |
ttggaactttcttagacttgcattcagatgcataatgcccc |
28451933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University