View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9130_high_7 (Length: 476)
Name: NF9130_high_7
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9130_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 23415690 - 23415485
Alignment:
| Q |
13 |
tttggtgtttagacatgaaccattaggtttttaaaatttttagtattttacttttctaagttgtaatgaactaatgggatcttgttgattcttttgtgta |
112 |
Q |
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| T |
23415690 |
tttggtgtttagacatgaaccattaggttttttaaatttttagtattttacttttctaagttgtaatg--ctaatgggatcttgttgattcttttgtgta |
23415593 |
T |
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| Q |
113 |
tgaaagtggttgaattaatgatattttacttgcttgtgtggtacaatagggttacagatacaagactcgtgctattgttattttaatgatttatgtgtac |
212 |
Q |
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| T |
23415592 |
ttaaagtggttgaattaatgatattttacttgcttgtgtggtacaattgggttacagatacaagactcgtgctattgttattttaatgatttatgtgtac |
23415493 |
T |
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| Q |
213 |
taaatctg |
220 |
Q |
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||||||| |
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| T |
23415492 |
aaaatctg |
23415485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 220 - 421
Target Start/End: Complemental strand, 23415435 - 23415234
Alignment:
| Q |
220 |
gaattattcgtattttattt--ttctataacttggcaaaaagttgtggttagtgatctagtgatgcagaatacttgtgtgcattgattgtttatgattat |
317 |
Q |
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| T |
23415435 |
gaattattcgtattttatttctttctataacttggcaaaaagttgtgtttagtgctctagtgatgcagaatacttgtgtgcattgattgtttatgattaa |
23415336 |
T |
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| Q |
318 |
ttaattttactgagtctgtaatttgaagtttgaactagtggagatgcaaaactacatgtgttttttacagtaggtaatcctgtccagaaaatttagattg |
417 |
Q |
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| T |
23415335 |
ttaattttactgagtctgtaatttgaagtttgaactagtggagatgcaaaactacatgtg--ttttacagtaggtaatcctgtccagaaaatttagattg |
23415238 |
T |
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| Q |
418 |
tttg |
421 |
Q |
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| T |
23415237 |
tttg |
23415234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 23408518 - 23408453
Alignment:
| Q |
52 |
ttagtattttacttttctaagttgtaatgaactaatgggatcttgttgat-tcttttgtgtatgaaa |
117 |
Q |
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| T |
23408518 |
ttagtgttttaattttctgagttgtaatgaactaatgggatc-tgttgatgtcttttgtgtaagaaa |
23408453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 23415025 - 23414972
Alignment:
| Q |
84 |
taatgggatcttgttgattcttttgtgtatgaaagtggttgaattaatgatatt |
137 |
Q |
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| T |
23415025 |
taatgggatctggttgatccttttgtgtatgataatggtggaattaatgatatt |
23414972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 26436696 - 26436759
Alignment:
| Q |
74 |
tgtaatgaactaatgggatcttgttgattcttttgtgtatgaaagtggttgaattaatgatatt |
137 |
Q |
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| T |
26436696 |
tgtaatgaactaatgggatcttgttgatccttctgttgaagaaaatggtagaattaataatatt |
26436759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 458
Target Start/End: Complemental strand, 23415212 - 23415183
Alignment:
| Q |
429 |
ctgccttttgttgattataagtgaacaaga |
458 |
Q |
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| T |
23415212 |
ctgccttttgttgattataagtgaacaaga |
23415183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 24298442 - 24298506
Alignment:
| Q |
70 |
aagttgtaatgaactaatgggatcttgttgattctttt-gtgtatgaaagtggttgaattaatga |
133 |
Q |
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| T |
24298442 |
aagttgtgatgaagtaattgtatcttgttgatcctttttgtgtatgatagtggtggaattaatga |
24298506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 43698699 - 43698635
Alignment:
| Q |
70 |
aagttgtaatgaactaatgggatcttgttgattc-ttttgtgtatgaaagtggttgaattaatga |
133 |
Q |
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| T |
43698699 |
aagttgtaatgaagtaatgggatatcgttggtcccttttgtgtatcaaagtggtagaattaatga |
43698635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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