View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9130_low_1 (Length: 854)
Name: NF9130_low_1
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9130_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 239 - 838
Target Start/End: Original strand, 46823873 - 46824455
Alignment:
| Q |
239 |
tagtagttgtgtatggaccccatgaacagaagctgatacgcgcgcccatgatgttatgtcccaggcaacaacatatctagatcgcataagagtgccactg |
338 |
Q |
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| T |
46823873 |
tagtagttgtgtatggaccccatgaacagaagctgatacgc----ccatgattttatgtcccaggcaacaacatatctagatcgcataagagtgccactg |
46823968 |
T |
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| Q |
339 |
ctggtttcccggtatatgcatccgtacgtgtccttctacatttcgttcacttttcactgaaattaatgcttcccaatattctgttcactagctatattgt |
438 |
Q |
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| T |
46823969 |
ctggtttcccggtatatgcatccgtacgtgtccttctacatttcgttcacttttcactgaaattaatgcttcccaatattctgttcactaa----attgt |
46824064 |
T |
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| Q |
439 |
ttttaggttcaaattcataattcaattctacttatattctgtggtgtttgacttgatatatacacattgacattggcatgctttgttcagtgtatatgct |
538 |
Q |
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| T |
46824065 |
ttttaggttcaaattcataattcaattctacttatattctgtggtgtttgacttgatatatacacattg------gcatgctttgttcagtgtatatgct |
46824158 |
T |
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| Q |
539 |
gcgaattattgaagg-ggagtggaactctgtgactctctgcactgtgaaaatgttaaagttactagtttcagtgtcctcttcgtttgctcttatatatcc |
637 |
Q |
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| T |
46824159 |
gcgaattattgaaggtggagtggaactctgtgactctctgcactgtgaaaatgttaaagttactagtttcagtgtcctctttgtttgctcttat----cc |
46824254 |
T |
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| Q |
638 |
tctttccatttattgtttgaaaattaaccacatggaaacattctacctatacattattaatactgcttacattggtagatttcaatttaaaattcaaatg |
737 |
Q |
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| T |
46824255 |
tctttccatttattgtttgaaaattaaccacatggagacattctacctatacattattaatactgctgacattggtaaatttcaatttaaaattcaaatg |
46824354 |
T |
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| Q |
738 |
tttgagtatttattaatgatgactgcatctaaaatttcttgaaaacgaaagaaaagaaaactggttatcatctctagagaacttttttatttcctttgat |
837 |
Q |
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| T |
46824355 |
tttgagtatttattaatgatgactgcatctaaaatttcttgaaaacgaaagaaaagaaaacaggttatcatctctagagaacttttttatttcctttgat |
46824454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 46823652 - 46823841
Alignment:
| Q |
18 |
caatttccagcttaacattgtctaggaaaccaattaccaattattttgaagctgacatatgatcgaatatctctgcttgcctaagtgctttttaaaaatc |
117 |
Q |
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| T |
46823652 |
caatttccagcttaacattgtctaggaaaccaattaccaattattttgaagctgacatatgatcgaatatctctgcttgcctaagtgctttttaaaattc |
46823751 |
T |
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| Q |
118 |
caccatttcactaattgaaaatatccattcttttgggtaggaaagtaggaaaccatatgatatatgaaatttaaaaccattttaataact |
207 |
Q |
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| T |
46823752 |
ctctatttcactaattgaaaatatccattcttttgggtaggaaagtaggaaaccatatgatatatgaaatttaaaaccattttaataact |
46823841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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