View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9130_low_11 (Length: 554)
Name: NF9130_low_11
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9130_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 37 - 415
Target Start/End: Original strand, 46931655 - 46932033
Alignment:
| Q |
37 |
tggctgagctgcagaaatcattagcatcattcaggagacaaggttcatcaggattggtttgggatgataaattcttgtctggtttgaatcagaatcaact |
136 |
Q |
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| T |
46931655 |
tggctgagctgcagaaatcattagcatcattcaggagacaaggttcatcaggattggtttgggatgataaattcttgtctggtttgaatcagaatcaact |
46931754 |
T |
|
| Q |
137 |
agaacaagagagtgcatcaactggcacgttggagagaagcagatcagctggagcaagaccatatcgatcggtcaacgttgcaccaacatcaattgaccca |
236 |
Q |
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| T |
46931755 |
agaacaagagagtgcatcaactggtacgttggagagaagcagatcagctggagcaagaccatatcgatcggtcaacgttgcaccaacatcaattgaccca |
46931854 |
T |
|
| Q |
237 |
ccttctcctaaggttgcaacatgtggtttttgtggtttgtttggtaaaccagttgctgcttcttcaacacataaatcaaataatcccaaatcaagaaaaa |
336 |
Q |
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| T |
46931855 |
ccttctcctaaggttgcaacatgtggtttttgtggtttgtttggtaaaccagttgctgcttcttcagcacataaatcaaataatcccaaatcaagaaaaa |
46931954 |
T |
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| Q |
337 |
gaagatcatgatcatccttaatctcttggtggtggtaattctccaacttgtatgtaaattagttcttaaatcttgatca |
415 |
Q |
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| T |
46931955 |
gaagatcatgatcatccttaatctcttggtggtggtaattatccaacttgtatgtaaattagttcttaaatcttgatca |
46932033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 478 - 536
Target Start/End: Original strand, 46932108 - 46932166
Alignment:
| Q |
478 |
ggtgttaaattgtgtaaattcgtagaacatatggatgtactatctccgtgtgaaataag |
536 |
Q |
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| T |
46932108 |
ggtgttaaattgtgtaaattcgtagaacatatggatgtactatctccgtgtgaaataag |
46932166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 44510317 - 44510360
Alignment:
| Q |
62 |
atcattcaggagacaaggttcatcaggattggtttgggatgata |
105 |
Q |
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||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
44510317 |
atcattcagaagacaaggttcatcagggtttgtttgggatgata |
44510360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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