View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9130_low_16 (Length: 461)
Name: NF9130_low_16
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9130_low_16 |
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| [»] scaffold0149 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 153 - 443
Target Start/End: Complemental strand, 798298 - 798008
Alignment:
| Q |
153 |
ataacacaattggacacttattgttggtatagttgtttgactactgtttacacgaggcaaaacactagaaagtcagatgctttaattgtgttcaattagt |
252 |
Q |
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| T |
798298 |
ataacacaattggacacttattgttggtatagttgtttgactactgtttacacgtggcaaaacaccagaaagtcagatgctttaattgtgttcaattagt |
798199 |
T |
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| Q |
253 |
cgatagtcagatgcttggcaagaaattaactaaatggcaactcatggtatattgtagcagagtatttatgtactctcttgggtccgatactaaatgaaga |
352 |
Q |
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| T |
798198 |
cgatagtcagatgcttggcaagaaattaactaaatggcaactcgtggtatattgtagcagagtatttatgtactctcttggatccgacactaaatgaaga |
798099 |
T |
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| Q |
353 |
atcatatgagcacattctatttttgccacccatgacatttacacactcgaagcacagaaatacacttcggtttcataccaagggagcacat |
443 |
Q |
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| T |
798098 |
atcatgtgagcacattatatttttgccacccatgacatttacacattcgaagcacagaaatacacttcggtttcataccaagggagcacat |
798008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 798440 - 798356
Alignment:
| Q |
15 |
cagagagaacatgtatatatttgtctctattttgtaaattttgctaggcaagcctaagtc----atctagcgagccaaacttaac |
95 |
Q |
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| T |
798440 |
cagagagaacatgtatatatttgtctctattttgtaaattttgctaggcaagcctaagtcatcgatctagcgagccaaacttaac |
798356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 797300 - 797204
Alignment:
| Q |
267 |
ttggcaagaaattaactaaatggcaactcatggtatattgtagcagagtatttatgtactctcttgggtccgatactaaatgaagaatcatatgagc |
363 |
Q |
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| T |
797300 |
ttggcaagaaattaacgaaatgacaccttgtgaaatgttgtagcagagtatttgtgtactctcttggctctgacactaaatgaagaatcatgtgagc |
797204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 2506639 - 2506718
Alignment:
| Q |
271 |
caagaaattaactaaatggcaactcatggtatattgtagcagagtatttatgtactctcttgggtccgatactaaatgaa |
350 |
Q |
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| T |
2506639 |
caagaaaataactaaatgacagtttatggaatattgtagcagagtatttgtgtattatcttgggtctaacactaaatgaa |
2506718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 9507758 - 9507857
Alignment:
| Q |
268 |
tggcaagaaattaactaaatggcaactcatggtatattgtagcagagtatttatgtactctcttgggtccgatactaaatgaagaatcatatgagcacat |
367 |
Q |
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| T |
9507758 |
tggcaagaaaataactaaatgacagcttgtggaacattatagcagagcatttgtgttctattttgggtctgaaactaaatgaagaattatgtgagcacat |
9507857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 9515733 - 9515832
Alignment:
| Q |
268 |
tggcaagaaattaactaaatggcaactcatggtatattgtagcagagtatttatgtactctcttgggtccgatactaaatgaagaatcatatgagcacat |
367 |
Q |
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| T |
9515733 |
tggcaagaaaataactaaatgacagcttgtggaacattatagcagagcatttgtgttctattttgggtctgaaactaaatgaagaattatgtgagcacat |
9515832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 25995 - 25936
Alignment:
| Q |
304 |
ttgtagcagagtatttatgtactctcttgggtccgatactaaatgaagaatcatatgagc |
363 |
Q |
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| T |
25995 |
ttgtagcagagcatttatgtactctcttgggtctgacactaaatgaagaatcatgtgagc |
25936 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 22931250 - 22931322
Alignment:
| Q |
303 |
attgtagcagagtatttatgtactctcttgggtccgatactaaatgaagaatcatatgagcacattctatttt |
375 |
Q |
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| T |
22931250 |
attgtagcagagcatttgtgtgctatcgtgggtctaaaactaaatgaagaatcatgtgagcacactctatttt |
22931322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 367
Target Start/End: Complemental strand, 24061519 - 24061419
Alignment:
| Q |
267 |
ttggcaagaaattaactaaatggcaactcatggtatattgtagcagagtatttatgtactctcttgggtccgatactaaatgaagaatcatatgagcaca |
366 |
Q |
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| T |
24061519 |
ttggcaagaaaataactaaatgacggcttgtgcaatattgtagcagagcatatgtggactctcttgggtctgacaccaaatgaagaatcatgcgagcaca |
24061420 |
T |
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| Q |
367 |
t |
367 |
Q |
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| T |
24061419 |
t |
24061419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 14527408 - 14527454
Alignment:
| Q |
172 |
attgttggtatagttgtttgactactgtttacacgaggcaaaacact |
218 |
Q |
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| T |
14527408 |
attgttggtatagttgtttgattactgtgtatacgatgcaaaacact |
14527454 |
T |
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