View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9130_low_18 (Length: 365)
Name: NF9130_low_18
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9130_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 62 - 351
Target Start/End: Complemental strand, 10426245 - 10425943
Alignment:
| Q |
62 |
tattaattgggaaattttaaatttaagagacaatttcttatgttacattggaatttctatgttcttaccctttaggattaaattctgctagtccaaatag |
161 |
Q |
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| T |
10426245 |
tattaattggggaattttaaatttaagagacaattttttatgttacattggaacttctatgttcttaccctttaggattaaattctgctagtccaaatag |
10426146 |
T |
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| Q |
162 |
tgtagtgatctgtttggcaaaggaaaaaagttacataaatcagcaaagtc---cta-----gtgtttttgagtgtctgacacatattggtgtccgagtga |
253 |
Q |
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| T |
10426145 |
tgtagtgatctgtttggcaaaggaaaaaagttacataaatcagcaaagtctatgtatcaaggtgtgtttgagtgtctgacacatattagtgtccgagtga |
10426046 |
T |
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| Q |
254 |
aacaatgtcggtgtttcacttggtgtattatagatgaa-----taaattaaattaaagagtaatgaagtagtatttttatgtacctcaccaataaaggat |
348 |
Q |
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| T |
10426045 |
aacaatgtcggtgtttcacttggtgtactatagatgaataaattaaattaaattaaagagtaataaagtagtatttttatgtacctcaccaataaaggat |
10425946 |
T |
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| Q |
349 |
ttg |
351 |
Q |
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| T |
10425945 |
ttg |
10425943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10426311 - 10426278
Alignment:
| Q |
1 |
gagaaaggcatcaacaggtaaactattcaagcaa |
34 |
Q |
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| T |
10426311 |
gagaaaggcatcaacaggtaaactattcaagcaa |
10426278 |
T |
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