View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9130_low_21 (Length: 321)
Name: NF9130_low_21
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9130_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 115 - 310
Target Start/End: Complemental strand, 37709413 - 37709206
Alignment:
| Q |
115 |
aacttctcttgaattataaaccaaactagcgattcggcactaagcggtgccac------------ccctcgtataatgtcgttcactaccaaactcccag |
202 |
Q |
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| T |
37709413 |
aacttctcttgaattataaaccaaactagcgattcggcactaagcggtgccactcctccccggacccctcgtataatgtcgttcactaccaaactcccag |
37709314 |
T |
|
| Q |
203 |
catgcctttgaaaatgatgatgctgaatattacacaggaaattgaatcattatgatatgagaaagaccacattacacatcaagcatggacacagatacaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37709313 |
catgcctttgaaaatgatgatgctgaatattacacaggaaattgaatcattatgatatgagaaagaccacattacacatcaagcatggacacagatacaa |
37709214 |
T |
|
| Q |
303 |
acaccaaa |
310 |
Q |
| |
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|||||||| |
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| T |
37709213 |
acaccaaa |
37709206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 37592247 - 37592045
Alignment:
| Q |
20 |
taaagcgtattgttgcttttagctgtgatgtgcaaatattcatcactgatggttcaattatagtatttaatctcttcaatctattcattgtgttcaactt |
119 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||| ||||| ||||||| |
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| T |
37592247 |
taaaacgtattgttgctttaagctgtgatgtgcaaatat-----------ggttcaagtataatatttaatctcttgaatctattccttgtggtcaactt |
37592159 |
T |
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| Q |
120 |
ctcttgaattataaaccaaactagcgattcggcactaagcggtgccacccctcgtataatgtcgttcactaccaaactcccagcatgcctttgaaaatga |
219 |
Q |
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| T |
37592158 |
ctcttgaattataaaccaaactagcgattcggcactaagcggtgccacccctcgtataatgtcgttcactaccaaactcccagcatgccttcgaaaatga |
37592059 |
T |
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| Q |
220 |
tgatgctgaatatt |
233 |
Q |
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| T |
37592058 |
tgatgctgaatatt |
37592045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 37531040 - 37530919
Alignment:
| Q |
20 |
taaagcgtattgttgcttttagctgtgatgtgcaaatattcatcactgatggttcaattatagtatttaatctcttcaatctattcattgtgttcaactt |
119 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37531040 |
taaaacgtattgttgctttaagctgtgatgtgcaaatattcatcactgatggttaaattatagtatttaatctcttcaatctattccttgtgttcaactt |
37530941 |
T |
|
| Q |
120 |
ctcttgaattataaaccaaact |
141 |
Q |
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| T |
37530940 |
ctcttgaattataaaccaaact |
37530919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 37694606 - 37694467
Alignment:
| Q |
20 |
taaagcgtattgttgcttttagctgtgatgtgcaaatattcatcactgatggttcaattatagtatttaatctcttcaatctattcattgtgttcaactt |
119 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||| | |
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| T |
37694606 |
taaaacgtattgttgctttaagctgtgatgtgcaaatat-----------ggttcaattataatatttaatctcttgaatctattccttgtgttcaacct |
37694518 |
T |
|
| Q |
120 |
ctcttgaattataaaccaaactagcgattcggcactaagcggtgccacccc |
170 |
Q |
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| T |
37694517 |
ctcttgaattataaaccaaactagcgattcggcactaagcggtgccacccc |
37694467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 37709535 - 37709434
Alignment:
| Q |
20 |
taaagcgtattgttgcttttagctgtgatgtgcaaatattcatcactgatggttcaattatagtatttaatctcttcaatctattcattgtgttcaactt |
119 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
37709535 |
taaaacgtattgttgctttaagctgtgatgtgcaaatat-----------ggttcaattataatatttaatctcttgaatctattccttgtgttcaactt |
37709447 |
T |
|
| Q |
120 |
ctcttgaattata |
132 |
Q |
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| T |
37709446 |
ctcttgaattata |
37709434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 37530926 - 37530883
Alignment:
| Q |
190 |
accaaactcccagcatgcctttgaaaatgatgatgctgaatatt |
233 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37530926 |
accaaactcccagcatgccttcgaaaatgatgatgctgaatatt |
37530883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 37694469 - 37694434
Alignment:
| Q |
198 |
cccagcatgcctttgaaaatgatgatgctgaatatt |
233 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
37694469 |
cccagcatgccttcgaaaatgatgatgctgaatatt |
37694434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 37821642 - 37821610
Alignment:
| Q |
26 |
gtattgttgcttttagctgtgatgtgcaaatat |
58 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
37821642 |
gtattgttgctttaagctgtgatgtgcaaatat |
37821610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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