View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9130_low_23 (Length: 307)
Name: NF9130_low_23
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9130_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 42448590 - 42448328
Alignment:
| Q |
10 |
taaacgagcttatccataagaatttttcaacagagaaataaaataaaaggtttcaatacaattttgtctctctattttccatctaaaattaatttttaca |
109 |
Q |
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| T |
42448590 |
taaacgagcttatccataagaatttttcaacagagaaataaaataaaaggtttcaatacaattttgtctctctattttccatctaaaattaatttttaca |
42448491 |
T |
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| Q |
110 |
ctatgcttgtttggtaaaatttatgaatttttacactatggttggt-nnnnnnnnnttgaaggaaagaatgtgatctgatcggatcaactgaactacatc |
208 |
Q |
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| T |
42448490 |
ctatgcttgtttggtaaaatttatgaatttttacactatggttggtacaaaaaaatttgaaggaaagaatatgatctgatcggatcaactgaactacgtc |
42448391 |
T |
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| Q |
209 |
cggtgcggtgagcttagttgttcttaattgtttggacactcgacactcaaatcagtatttgaa |
271 |
Q |
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| T |
42448390 |
cggtgcggtgagcttagttgttcttaattgtttggacactcgacactcaaatcagtatttgaa |
42448328 |
T |
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