View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9130_low_27 (Length: 253)

Name: NF9130_low_27
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9130_low_27
NF9130_low_27
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-238)||(10242-10469)
[»] chr7 (11 HSPs)
chr7 (18-238)||(16421530-16421757)
chr7 (72-224)||(21268186-21268340)
chr7 (72-194)||(48187370-48187494)
chr7 (72-225)||(11283361-11283516)
chr7 (20-233)||(28383956-28384174)
chr7 (20-225)||(28392832-28393041)
chr7 (72-198)||(36017885-36018014)
chr7 (72-225)||(12528695-12528850)
chr7 (72-131)||(16483979-16484040)
chr7 (168-233)||(16484017-16484081)
chr7 (186-238)||(48186614-48186667)
[»] chr6 (3 HSPs)
chr6 (18-238)||(3509715-3509942)
chr6 (80-233)||(24540590-24540746)
chr6 (97-209)||(15277846-15277960)
[»] chr3 (4 HSPs)
chr3 (80-238)||(1311421-1311582)
chr3 (72-238)||(19932673-19932842)
chr3 (72-225)||(3224675-3224831)
chr3 (72-238)||(11034881-11035051)
[»] chr4 (4 HSPs)
chr4 (72-233)||(15418859-15419023)
chr4 (72-223)||(15425876-15426029)
chr4 (72-221)||(28654414-28654565)
chr4 (111-225)||(52944822-52944932)
[»] chr8 (4 HSPs)
chr8 (72-238)||(44668822-44668990)
chr8 (18-225)||(5537065-5537281)
chr8 (80-225)||(3897273-3897423)
chr8 (72-216)||(6818499-6818647)
[»] chr1 (3 HSPs)
chr1 (82-238)||(18901914-18902073)
chr1 (72-225)||(18153334-18153489)
chr1 (74-163)||(51783494-51783585)
[»] scaffold0655 (1 HSPs)
scaffold0655 (72-225)||(7497-7648)
[»] scaffold0172 (1 HSPs)
scaffold0172 (72-225)||(34622-34778)
[»] chr2 (2 HSPs)
chr2 (161-225)||(29963028-29963092)
chr2 (80-225)||(2038952-2039100)


Alignment Details
Target: scaffold0003 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 10242 - 10469
Alignment:
Q  18 atagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgca-------gggcattactccacgcgcttccgtacgtgtatgtgtga 110  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||| ||||||||| | |||||||||||||||||||    
T  10242 atagacgtagtggaacaaagaatgtttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtga 10341  T
Q  111 atatttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgtgataattatcttggtagtgttgttttg 210  Q
     ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  10342 ctatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgttatatattggtgatgtgataattatcttggtggtgttgttttg 10441  T
Q  211 gcatgaatattatgttattatttctgtg 238  Q
    ||||||||||||||||||||||| ||||    
T  10442 gcatgaatattatgttattatttttgtg 10469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 16421530 - 16421757
Alignment:
Q  18 atagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgca-------gggcattactccacgcgcttccgtacgtgtatgtgtga 110  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||| ||||||||| | |||||||||||||||||||    
T  16421530 atagacgtagtggaacaaagaatgtttcatgggaattttaagagttcttgttgcaaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtga 16421629  T
Q  111 atatttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgtgataattatcttggtagtgttgttttg 210  Q
     ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  16421630 ctatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgttatatattggtgatgtgataattatcttggtggtgttgttttg 16421729  T
Q  211 gcatgaatattatgttattatttctgtg 238  Q
    ||||||||||||||||||||||| ||||    
T  16421730 gcatgaatattatgttattatttttgtg 16421757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 21268340 - 21268186
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgcta 169  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||  |||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||||    
T  21268340 agggcatcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattattatagtgttgttgttttgaaatgagtgctatgtgcta 21268241  T
Q  170 tatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatg 224  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  21268240 tatattggtgatgtgataattatcttggtgatgttgtttttgcatgaatattatg 21268186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 48187494 - 48187370
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgcta 169  Q
    ||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  48187494 agggcatcactccacgcgcttccatacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgcta 48187395  T
Q  170 tatattggtgatgtgataattatct 194  Q
    |||||||||||||||||||||||||    
T  48187394 tatattggtgatgtgataattatct 48187370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 11283516 - 11283361
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtat--gtgtgaatatttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgct-atgtgct 168  Q
    ||||||| |||||||||||||||||||||||||  ||||| ||| ||||||||||||||||| |||| || |||||||| ||| |||||| | ||||| |    
T  11283516 agggcatcactccacgcgcttccgtacgtgtatatgtgtgtataattgtgttgtgataattatcataatgatgttgtttagaaatgaatgattatgtgtt 11283417  T
Q  169 atatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt 225  Q
    ||||||||||| |||||||||||||||||| || ||| ||||| |||||||||||||    
T  11283416 atatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgt 11283361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 28383956 - 28384174
Alignment:
Q  20 agacgtagtggaacaaagaatgcttcatgggaattttaagagtt--cttgttgcagg-----gcattactccacgcgcttccgtacgtgtatgtgtgaat 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  | |  || |||     | || |||||||||  ||| |||||||||||| |  ||    
T  28383956 agacgtagtggaacaaagaatgcttcatgggaattttaaaagtttccattgtgaaggtaagagtatcactccacgcatttcggtacgtgtatgtat--at 28384053  T
Q  113 atttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgtgataattatcttggtagtgttgttttggc 212  Q
    || |||||| ||||||||| |||| ||||||||||||||| |||||| |||||| |||||||| ||| |||| |||||| |||||| |||||||||||||    
T  28384054 atctgtgttttgataattatcataatgttgttgttttgaaatgaatgttatgtgttatatattcgtggtgtggtaatta-cttggtggtgttgttttggc 28384152  T
Q  213 atgaatattatgt-tattattt 233  Q
    ||||| ||||||| ||||||||    
T  28384153 atgaacattatgtgtattattt 28384174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 28392832 - 28393041
Alignment:
Q  20 agacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgc-------agggcattactccacgcgcttccgtacgtgtatgtgtgaat 112  Q
    |||||||||||||||||||| |||||||||||||||||| ||||  |||||        || |||| |||||||||| ||| ||  |||||||| |  ||    
T  28392832 agacgtagtggaacaaagaa-gcttcatgggaattttaaaagtttctgttgtgaaggcaagagcatcactccacgcgtttcggtgtgtgtatgtat--at 28392928  T
Q  113 atttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgtgataattatcttggtagtgttgttttggc 212  Q
    |||||| || |||||||||  ||| ||||||||||||||| |||||| |||||| |||||||||||| |||| ||||| |||||||  |||||||||||     
T  28392929 atttgttttttgataattattataatgttgttgttttgaaatgaatgttatgtgttatatattggtggtgtggtaattctcttggtgttgttgttttggt 28393028  T
Q  213 atgaatattatgt 225  Q
    |||||||||||||    
T  28393029 atgaatattatgt 28393041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 36017885 - 36018014
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatg-ctatgtgct 168  Q
    ||||||| |||||||| |||||||||||||||| |||| ||||  ||||||||||||||||| |||| || |||||||||||| ||||||  |||||| |    
T  36017885 agggcatcactccacgtgcttccgtacgtgtatatgtgtatataattgtgttgtgataattatcatattggtgttgttttgaaatgaatgattatgtgtt 36017984  T
Q  169 atatattggtgatgtgataattatcttggt 198  Q
    ||||||||||| ||||||||||||||||||    
T  36017985 atatattggtgttgtgataattatcttggt 36018014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 12528850 - 12528695
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatg-ctatgtgct 168  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||  ||||||| ||||||||  |||| || |||||||||||| ||||||  |||||| |    
T  12528850 agggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataattgtcataatggtgttgttttgaaatgaatgattatgtgtt 12528751  T
Q  169 atatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt 225  Q
    ||||| || || |||||||||||||||||| || ||| ||| | |||||||||||||    
T  12528750 atataatgatgttgtgataattatcttggtggt-ttgcttttgtatgaatattatgt 12528695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 16483979 - 16484040
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtg--tatgtgtgaatatttgtgttgtgataatta 131  Q
    ||||||| ||||||||||||||||||||||  |||||||  |||||||||||||||||||||    
T  16483979 agggcatcactccacgcgcttccgtacgtgtatatgtgtatatatttgtgttgtgataatta 16484040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 16484017 - 16484081
Alignment:
Q  168 tatatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgttattattt 233  Q
    |||||||| ||| |||||||||||||||||| || |||||| |||||||||| | |||||||||||    
T  16484017 tatatatttgtgttgtgataattatcttggtggttttgtttcggcatgaata-tgtgttattattt 16484081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 48186667 - 48186614
Alignment:
Q  186 taattatcttggtagtgttgttttggcatgaatattatgt-tattatttctgtg 238  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||| ||||    
T  48186667 taattatcttggtgttgttgttttggcatgaatattatgtgtattatttttgtg 48186614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 3509715 - 3509942
Alignment:
Q  18 atagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgca-------gggcattactccacgcgcttccgtacgtgtatgtgtga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||| | |||| ||||||||||| ||||||||||||    
T  3509715 atagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttggtgcaaaggtaagggcatcattccatgcgcttccgtatgtgtatgtgtga 3509814  T
Q  111 atatttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgtgataattatcttggtagtgttgttttg 210  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  3509815 atatttgtgttgtgatggttaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgtgataattaccttggtgttgttgttttg 3509914  T
Q  211 gcatgaatattatgttattatttctgtg 238  Q
    ||||||||||||||||||||||| ||||    
T  3509915 gcatgaatattatgttattatttatgtg 3509942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 24540590 - 24540746
Alignment:
Q  80 actccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattgg 177  Q
    ||||||| ||||||||||||| |||||||||||||  |||||||||||| |||| |||| ||||||||||||||||||||||||||||  ||||||||||    
T  24540590 actccacacgcttccgtacgtttatgtgtgaatatatttgtgttgtgatgattatcatattgttgttgttttgaagtgaatgctatgttttatatattgg 24540689  T
Q  178 tgatgtgataattatcttggtagtgttgttttggcatgaatattatgt-tattattt 233  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  24540690 tgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt 24540746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 15277846 - 15277960
Alignment:
Q  97 acgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgtgataattatct 194  Q
    ||||||||||||| ||||  ||||||| ||||||||| |||| | ||||||||| ||| ||||||||||||| |||||||||||| | ||||||||||||    
T  15277846 acgtgtatgtgtgtatatatttgtgttttgataattaacataatattgttgtttggaaatgaatgctatgtgttatatattggtggtatgataattatct 15277945  T
Q  195 tggtagtgttgtttt 209  Q
    |||| ||||||||||    
T  15277946 tggtggtgttgtttt 15277960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 1311421 - 1311582
Alignment:
Q  80 actccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattgg 177  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||| ||||  ||||||||||||||||||||||||| ||||||| ||||||||||    
T  1311421 actccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatactatgtgttatatattgg 1311520  T
Q  178 tgatgtgataattatcttggtagtgttgttttggcatgaatattatgt-tattatttctgtg 238  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  1311521 tgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattatttatgtg 1311582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 19932673 - 19932842
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgcta 169  Q
    ||||||| ||||||||||||||||||||||||| | |||||||  |||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||    
T  19932673 agggcatcactccacgcgcttccgtacgtgtatttatgaatatatttgtgtcgtgatgattattatagtgttgttgttttgaagtgaatgctatgtgcta 19932772  T
Q  170 tatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt-tattatttctgtg 238  Q
    ||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  19932773 tatattgctgatgtgatagttatcttggtggtggtgttttggcatgaatattatgtgtattatttctgtg 19932842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 3224675 - 3224831
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtg--tgaatatttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgcta 169  Q
    ||||||| |||||||||| |||||||| ||||| ||  |  ||||||||||||||||||||| |||| || |||||||| ||| |||||| |||||||||    
T  3224675 agggcatcactccacgcgtttccgtacatgtatatgattatatatttgtgttgtgataattagcatattgctgttgttt-gaaatgaatgttatgtgcta 3224773  T
Q  170 ta--tattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt 225  Q
    ||  |||||||| ||||||||||||||||||  |||||||||| ||||||||||||||    
T  3224774 tatatattggtgttgtgataattatcttggtgttgttgttttgacatgaatattatgt 3224831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 11035051 - 11034881
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgct-atgtgct 168  Q
    ||||||| ||| |||||| |||||||| ||||| |||| ||||  ||||||||||||||||| |||| || |||||||||||| |||||| | ||||| |    
T  11035051 agggcatcacttcacgcgtttccgtacatgtatatgtgtatataattgtgttgtgataattatcataatgatgttgttttgaaatgaatgattatgtgtt 11034952  T
Q  169 atatattggtgatgtgataattatcttggtagtgttgttttggcatgaatatta--tgttattatttctgtg 238  Q
    ||||||||||| |||||||||||||||||| |  ||| ||||| ||||||||||  ||||||||||| ||||    
T  11034951 atatattggtgttgtgataattatcttggt-gatttgctttggtatgaatattatttgttattatttgtgtg 11034881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 72 - 233
Target Start/End: Original strand, 15418859 - 15419023
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgcta 169  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||  |||||||||||| |||| |||||||||||||||||||||||||||||||||  ||    
T  15418859 agggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtttta 15418958  T
Q  170 tatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt-tattattt 233  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  15418959 tatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt 15419023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 15425876 - 15426029
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgcta 169  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||  |||||||||||| |||| |||||| |||||||||||||||||||||||||| |||    
T  15425876 agggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtattgttgttttgaagtgaatgctatgttcta 15425975  T
Q  170 tatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattat 223  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  15425976 tatattggtgatgtgataattagcttggtggtgttgttttggcatgaatattat 15426029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 28654565 - 28654414
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgct-atgtgct 168  Q
    ||||||| |||||||||| |||||||||||||| |||| ||||  || |||||||||||||| |||| ||  ||||||||||| |||||| | ||||| |    
T  28654565 agggcatcactccacgcgtttccgtacgtgtatatgtgtatataattctgttgtgataattatcataatggggttgttttgaaatgaatgattatgtgtt 28654466  T
Q  169 atatattggtgatgtgataattatcttggtagtgttgttttggcatgaatatt 221  Q
    ||||||||||| |||||||||||||||||| || ||| ||||| |||||||||    
T  28654465 atatattggtgttgtgataattatcttggtggt-ttgctttggaatgaatatt 28654414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 52944822 - 52944932
Alignment:
Q  111 atatttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtgatgtgataattatcttggtagtgttgttttg 210  Q
    |||||||||||||||||||||      || |||||||||||| ||||||||||||  |||  ||||||| ||||||||||| |||||| || || ||||     
T  52944822 atatttgtgttgtgataattat-----tggtgttgttttgaaatgaatgctatgtattattaattggtgttgtgataattaccttggtggttttatttta 52944916  T
Q  211 gcatg-aatattatgt 225  Q
    ||||| ||||||||||    
T  52944917 gcatgaaatattatgt 52944932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 44668822 - 44668990
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgcta 169  Q
    ||||||| |||| ||||||||||||||||||||||||||||||  |||||||||||| |||| |||||||||||||||| |||||||||| |||||||||    
T  44668822 agggcatcactctacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttt-gaagtgaatgttatgtgcta 44668920  T
Q  170 tatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt-tattatttctgtg 238  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||| ||||    
T  44668921 tatattggtgatgtgataattatcttggtgttgttgttttggcatgaatattatgtgtattatttatgtg 44668990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 5537281 - 5537065
Alignment:
Q  18 atagacgtagtggaacaaagaatgcttcatgggaattttaagagttcttgttgca--gg-----gcattactccacgcgcttccgtacgtgtatgtgtga 110  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  ||     |||| ||||||||||||||||||||||||| ||||     
T  5537281 atagacgtagtggaacaaagaatgattcctgggaattttaagagttcttgttgcaaaggtaacagcatcactccacgcgcttccgtacgtgtatatgtgt 5537182  T
Q  111 atat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatg-ctatgtgctatatattggtgatgtgataattatcttggtagtgttgtt 207  Q
    ||||  |||||| |||||||||| |||| || |||||||||||| ||||||  |||||| |||||| ||||| |||||||||||||||||| || ||| |    
T  5537181 atataattgtgtagtgataattatcataatggtgttgttttgaaatgaatgattatgtgttatatagtggtgttgtgataattatcttggtggt-ttgct 5537083  T
Q  208 ttggcatgaatattatgt 225  Q
    |||| |||||||||||||    
T  5537082 ttggtatgaatattatgt 5537065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 3897423 - 3897273
Alignment:
Q  80 actccacgcgcttccgtacgtgtatgtgtgaatat----ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatg-ctatgtgctatatat 174  Q
    |||||||| | |||||||||||||| |||  ||||    |||||||||||||||||   | ||| |||||||||||| |||||| ||||||| || ||||    
T  3897423 actccacgtgtttccgtacgtgtatatgtatatatataattgtgttgtgataattattttggtggtgttgttttgaaatgaatgactatgtgttacatat 3897324  T
Q  175 tggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt 225  Q
    | ||| |||||||||||| ||||| ||||||||||||||||||||| ||||    
T  3897323 ttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgt 3897273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 6818499 - 6818647
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttg-ttttgaagtgaatgctatgtgct 168  Q
    ||||||| |||||||||||||  |||||||||| | || ||||  |||| |||||||||||| ||||||| ||||| ||||||| |||||| ||| || |    
T  6818499 agggcatcactccacgcgcttatgtacgtgtatatttgtatatatttgtattgtgataattatcatagtggtgttgtttttgaaatgaatgttatctgtt 6818598  T
Q  169 atatattggtgatgtgataattat-cttggtagtgttgttttggcatga 216  Q
    |||| ||| || ||||||||||||  ||||| || |||| |||||||||    
T  6818599 atatgttgttgttgtgataattatatttggtggttttgtcttggcatga 6818647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 18901914 - 18902073
Alignment:
Q  82 tccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgctatatattggtg 179  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||| ||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  18901914 tccacgcgcttccgtacgtgtatttgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatgatatgtgctatatattggtg 18902013  T
Q  180 atgtgataattatcttggtagtgttgttttggcatgaatattatgt-tattatttctgtg 238  Q
    |||||||| ||||||||||  ||||||||| ||||||||||||||| |||||||||||||    
T  18902014 atgtgatagttatcttggtgttgttgtttttgcatgaatattatgtgtattatttctgtg 18902073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 18153334 - 18153489
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatg-ctatgtgct 168  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||  |||||| |||||||||| |||| || |||||||||||| ||||||  |||||| |    
T  18153334 agggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattatcataatggtgttgttttgaaatgaatgattatgtgtt 18153433  T
Q  169 atatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt 225  Q
    ||||||||||| |||||||||||||||||| || ||| ||||| |||||||||||||    
T  18153434 atatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgt 18153489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 51783585 - 51783494
Alignment:
Q  74 ggcattactccacgcgcttccgtacgtgtatgtgtgaatat--ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctat 163  Q
    ||||| |||||||| ||||| |||||| |||||||||||||  || |||| | || ||||  ||||||||||||||||||||| ||||||||    
T  51783585 ggcatcactccacgtgcttctgtacgtatatgtgtgaatatatttatgttataatgattattatagtgttgttgttttgaagtaaatgctat 51783494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 7497 - 7648
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatat----ttgtgttgtgataattaccatagtgttgttgttttgaagtgaatgctatgtgc 167  Q
    ||||||| ||||||||||||||||||| ||||||| |  ||||    ||||||||||||||||| ||| ||||||||   ||||| ||   | ||||||     
T  7497 agggcatcactccacgcgcttccgtacatgtatgtttatatatctatttgtgttgtgataattatcatggtgttgtt---ttgaaatg---gttatgtgt 7590  T
Q  168 tatatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt 225  Q
    ||| |||||||| ||| |||||||||||||| || |||||||| ||||||||||||||    
T  7591 tatgtattggtgttgtaataattatcttggtggttttgttttgccatgaatattatgt 7648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 34778 - 34622
Alignment:
Q  72 agggcattactccacgcgcttccgtacgtgtatgtgtgaatatt--tgtgttgtgataattaccatagtgttgttgttttgaagtgaatgct-atgtgct 168  Q
    ||||||| |||||||||| |||||||||||||| |||  ||||   ||||||||||||||||   | ||| || | ||||||| |||| | | ||||| |    
T  34778 agggcatcactccacgcgtttccgtacgtgtatatgtatatataactgtgttgtgataattattttggtggtgctattttgaaatgaaggattatgtgtt 34679  T
Q  169 atatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt 225  Q
     |||||| ||| |||||||||||| ||||| ||||||||||||||||||||| ||||    
T  34678 ttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgt 34622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 29963092 - 29963028
Alignment:
Q  161 tatgtgctatatattggtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt 225  Q
    |||||| | |||||| ||| |||||||||||| ||||| ||||||||||||||||||||| ||||    
T  29963092 tatgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgt 29963028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 2038952 - 2039100
Alignment:
Q  80 actccacgcgcttccgtacgtgtatgtgtgaatatt--tgtgttgtgataattaccatagtgttgttgttttgaagtgaatgct-atgtgctatatattg 176  Q
    |||||||| |||||||||| ||||| |||  ||||   ||||||||||||||||   | ||| ||  |||||||| |||| | | ||||| | ||||||     
T  2038952 actccacgtgcttccgtacatgtatatgtatatataactgtgttgtgataattattttggtggtgccgttttgaaatgaaggattatgtgttttatattt 2039051  T
Q  177 gtgatgtgataattatcttggtagtgttgttttggcatgaatattatgt 225  Q
    ||| | |||||||||| ||||| ||||||||||| ||||||||| ||||    
T  2039052 gtgttatgataattattttggtggtgttgttttgacatgaatatcatgt 2039100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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