View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9130_low_3 (Length: 826)
Name: NF9130_low_3
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9130_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 770; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 18 - 810
Target Start/End: Original strand, 38949862 - 38950655
Alignment:
| Q |
18 |
caagcctagcaatggcagcattatcattggtcttgaatgacacatactggaacctgtcgctcgttgattttgcagctacagcaaaattttgtggtactat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38949862 |
caagcctagcaatggcagcattatcattggtcttgaatgacacatactggaacctgtcgctcattgattttgcagctacagcaaaattttgtggtactat |
38949961 |
T |
|
| Q |
118 |
caacacgcgaccggcttcaagttcgccatcaaacacagtgttgccattgcagttcactacttgtaaccgtgcacgtcccctcaatgcgtatattgcgctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38949962 |
caacacgcgaccggcttcaagttcgccatcaaacacagtgttgccattgcagttcactacttgtaaccgtgcacgtcccctcaatgcgtatattgcgctg |
38950061 |
T |
|
| Q |
218 |
tttgcattcagattgtagtgtggcacgaacatagcattctgtatggacattttattgagttagctattactttccaacatttccagtaatgttgaactta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38950062 |
tttgcattcagattgtagtgtggcacgaacatagcattctgtatggacattttattgagttagctattactttccaacatttccagtaatgttgaactca |
38950161 |
T |
|
| Q |
318 |
aattaaaagaaa-taacaaatttaccctgtggagagttccatgttcagcactgagtctgagccaccttagagctgggaggtcaaagctggtgacagtttt |
416 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950162 |
aattaaaagaaaataacaaatttaccctgtggagagttccatgttcagcactgagtctgagccaccttagagctgggaggtcaaagctggtgacagtttt |
38950261 |
T |
|
| Q |
417 |
gattctaccagcttcagggttgtagatgtcaggtgatgaagatgagccaatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttgctt |
516 |
Q |
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| T |
38950262 |
gattctaccagcttcagggttgtagatgtcaggtgatgaagatgagccaatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttgctt |
38950361 |
T |
|
| Q |
517 |
ctttcacatttttggcctcggcggcaggggcgctcttcctcttcccctcttctgcttttctgatgatgtggcctcctccactcgtcctcttcatcttcat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950362 |
ctttcacatttttggcctcggcggcaggggcgctcttcctcttcccctcttctgcttttctgatgatgtggcctcctccactcgtcctcttcatcttcat |
38950461 |
T |
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| Q |
617 |
cttcctctattatgctgcctccttggtgacgtgattgcctctctggtggggtaacgaagctgaggccacctttcactttgacaatggctcccttctcctc |
716 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38950462 |
cttcctctattatgctgcctccttggtgacgtgattgcctctctggtggggtaacaaagctgaggccacctctcactttgacaatggctcccttctcctc |
38950561 |
T |
|
| Q |
717 |
atcttcattcctgccttgaagtctgtcaactatatgcctattcacgttcaatgcatcttccaagaaatccctcttgaagccactgaaaatgttg |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950562 |
atcttcattcctgccttgaagtctgtcaactatatgcctattcacgttcaatgcatcttccaagaaatccctcttgaagccactgaaaatgttg |
38950655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 343 - 513
Target Start/End: Original strand, 38942752 - 38942922
Alignment:
| Q |
343 |
ctgtggagagttccatgttcagcactgagtctgagccaccttagagctgggaggtcaaagctggtgacagttttgattctaccagcttcagggttgtaga |
442 |
Q |
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||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
38942752 |
ctgtggagagttccatgctcagcactgagtcttagccacctgagagctgggaggtcgaagctggtgatagttttgattctaccagcttgagggttgtaga |
38942851 |
T |
|
| Q |
443 |
tgtcaggtgatgaagatgagccaatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttg |
513 |
Q |
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|||||||||||||||||||| | ||||||||| |||| || || ||||||||||||||| ||||||||||| |
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| T |
38942852 |
tgtcaggtgatgaagatgagaccatgttctggtgaagcctggcagtgcaaattgtttccgcaagaccgttg |
38942922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 563 - 810
Target Start/End: Original strand, 38942936 - 38943177
Alignment:
| Q |
563 |
ctcttctgcttttctgatgatgtggcctcctccactcgtcctcttcatcttcatcttcctctattatgctgcctccttgg-tgacgtgattgcctctctg |
661 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || || || || || || || ||| ||| ||||||| |
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| T |
38942936 |
ctcttctgcttttctgatgatgtggcctcc---actcatcctcttcatcttcatcttcttc----atcttgtctgctggggtggcgttgttgtctctctg |
38943028 |
T |
|
| Q |
662 |
gtggggtaacgaagctgaggccacctttcactttgacaatggctcccttctcctcatcttcattcctgccttgaagtctgtcaactatatgcctattcac |
761 |
Q |
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| ||| | | || |||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||||| |
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| T |
38943029 |
gagggctcatgatgctgagtcctccttccactttgacaatggctcccttctcctggtcttcattcctgccttgaagtttttcaactatatgccttttcac |
38943128 |
T |
|
| Q |
762 |
gttcaatgcatcttccaagaaatccctcttgaagccactgaaaatgttg |
810 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38943129 |
gttcaatgcatcttccaagaaatccctcttgaagccactgaaaatgttg |
38943177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 38942426 - 38942667
Alignment:
| Q |
18 |
caagcctagcaatggcagcattatcattggtcttgaatgacacatactggaacctgtcgctcgttgattttgcagctacagcaaaattttgtggtactat |
117 |
Q |
| |
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||||||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| || |||||||| |||||||| || || |
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| T |
38942426 |
caagcctggcaattgcggcattatcattggtcttgaatgaaacataagtgaacctgtcgctcactgattttgctgcaacagcaaagttttgtggcacgat |
38942525 |
T |
|
| Q |
118 |
caacacgcgaccggcttcaagttcgccatcaaacacagtgttgccattgcagttcactacttgtaaccgtgcacgtcccctcaatgcgtatattgcgctg |
217 |
Q |
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||| | || || ||||| ||||| |||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||| |||| |
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| T |
38942526 |
caatgcacggccagcttctagttcctcatcgaacacagtgttgccattgcagttcactacttgtagccttgcacgtccattcaatgccaatattatgctg |
38942625 |
T |
|
| Q |
218 |
tttgcattcagattgtagtgtggcacgaacatagcattctgt |
259 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
38942626 |
tttgcattgagattgtagtgtggaacgaacatagcattctgt |
38942667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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