View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9130_low_9 (Length: 590)
Name: NF9130_low_9
Description: NF9130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9130_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 11 - 572
Target Start/End: Original strand, 32568638 - 32569202
Alignment:
| Q |
11 |
gaagcagagatatttagaattaagagagaagctaaagttcttgctacttaccttatacatccacatgccaaaatctttcatttcagtgaacaatattctc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32568638 |
gaagcagagatatttagaattaagagagaagctaaagttcttgctacttaccttatacatccacatgccaaaatctttcatttcagtgaacaatattctc |
32568737 |
T |
|
| Q |
111 |
caagctcttgactcattaaaatcactggaaatttccttgagtcaagccaaatttaagcaagctgttgat---tgtgaagaagaaagcattcctgcttgct |
207 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32568738 |
caagctcttgactcgttaaaatcactggaaatttccttgagtcaagccaaatttaagcaagctgttgatgattgtgaagaagaaagcattcctgcttgct |
32568837 |
T |
|
| Q |
208 |
ttggaccatcaagtttggaaagaaatgattgccttcgcatactaagtttcctttccaactcaatttcgcttcctgattttaaagtgagacatcaagtgga |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32568838 |
ttggaccatcaagtttggaaagaaaggattgccttcacatactaagtttcctttccaagtcaatttcgcttcctgattttaaagtgagacatcaagtgga |
32568937 |
T |
|
| Q |
308 |
aaagttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagttatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32568938 |
aaagttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagttatt |
32569037 |
T |
|
| Q |
408 |
gatgaagcagctatgctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcctg |
507 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32569038 |
gatgaagcagctatgctaaaagaatgcgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcaacttcctg |
32569137 |
T |
|
| Q |
508 |
cattggtaaaaagcaaggtatttgatcattgctgtttttgttattgtttaaattgtggatatttt |
572 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
32569138 |
cattggtaaaaagcaaggtatttgatcattgctgtttttgttattgtttaaactgtagatatttt |
32569202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 11 - 436
Target Start/End: Complemental strand, 32645762 - 32645334
Alignment:
| Q |
11 |
gaagcagagatatttagaattaagagagaagctaaagttcttgctacttaccttatacatccacatgccaaaatctttcatttcagtgaacaatattctc |
110 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||||||| ||| ||| |||| || |||||||||||||||||| |||||||| |||||||| ||| |
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| T |
32645762 |
gaagcagagatttggagaattaagtgagaagctaaagttcttgatacatacgttatgcacccacatgccaaaatctttaatttcagttaacaatatgctc |
32645663 |
T |
|
| Q |
111 |
caagctcttgactcattaaaatcactggaaatttccttgagtcaagccaaatttaagcaagctgt---tgattgtgaagaagaaagcattcctgcttgct |
207 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |
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| T |
32645662 |
caagctcttgacttgttaaaatcaatggaaatttccttgagtcaagccaaatttaagcaaactgtagatgattttgaagaagaaagcattcctgcttgct |
32645563 |
T |
|
| Q |
208 |
ttggaccatcaagtttggaaagaaatgattgccttcgcatactaagtttcctttccaactcaatttcgcttcctgattttaaagtgagacatcaagtgga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32645562 |
ttggaccatcaagtttggaaagaaatgattgccttcgcatactaagtttcctttccaactcaatttcgcttcctgaatttaaagtgagacatcaagtgga |
32645463 |
T |
|
| Q |
308 |
aaagttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagttatt |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||| |
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|
| T |
32645462 |
aaagttttgcttgtcagatgctagtctaattttgtgtactgtatcaagttctatcaaactttactcagaagagacgagtccagtgaaatttttagtgatt |
32645363 |
T |
|
| Q |
408 |
gatgaagcagctatgctaaaagaatgtga |
436 |
Q |
| |
|
||||||||||| ||| ||||||||||| |
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| T |
32645362 |
gatgaagcagcacagctgaaagaatgtga |
32645334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 312 - 539
Target Start/End: Complemental strand, 32525432 - 32525205
Alignment:
| Q |
312 |
ttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagttattgatg |
411 |
Q |
| |
|
|||||||||||||||||| | ||||| || ||||||| |||||| ||| | ||||| ||| ||| ||| ||| || | |||||||||| || |||| |
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| T |
32525432 |
ttttgcttgtcaaatgcttgcctaatcttctgtactgcatcaagttctgttaaactatacacagccgaggtgagcccaattcaatttttagtaatcgatg |
32525333 |
T |
|
| Q |
412 |
aagcagctatgctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcctgcatt |
511 |
Q |
| |
|
|||| || ||||||||||||||| ||||| |||||||| ||||| |||||||| | |||| ||||| || || |||||||| || ||||||||||| |
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|
| T |
32525332 |
aagcggcacagctaaaagaatgtgaatcaacgattccattacagctgtctggtctccgcaattgcatcctgatcggagatgagagacaacttcctgcatt |
32525233 |
T |
|
| Q |
512 |
ggtaaaaagcaaggtatttgatcattgc |
539 |
Q |
| |
|
||| |||||||||||| ||||||||||| |
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|
| T |
32525232 |
ggtgaaaagcaaggtagttgatcattgc |
32525205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 306 - 527
Target Start/End: Complemental strand, 32614175 - 32613954
Alignment:
| Q |
306 |
gaaaagttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagtta |
405 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||| || || || ||||| ||||| ||| |||||| | | || |||||||||||||| | |
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|
| T |
32614175 |
gaaaagttttgcttgtctaatgcatgtctgattttgtgtacagtgtctagttctattaaactgtacacagaaggaatggctcacgtgaaatttttagtga |
32614076 |
T |
|
| Q |
406 |
ttgatgaagcagctatgctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcc |
505 |
Q |
| |
|
||||||||||||| ||| ||||||||||| || | ||||| |||||||| || ||||| ||| | || || ||||||||||||| || ||||| |
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|
| T |
32614075 |
ttgatgaagcagcacagctgaaagaatgtgaatccatgattccgttgcagctaccgggtcttcaacatggcattcttataggtgatgagaaacaacttcc |
32613976 |
T |
|
| Q |
506 |
tgcattggtaaaaagcaaggta |
527 |
Q |
| |
|
||||| || |||||||||||| |
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|
| T |
32613975 |
ggcattagtcaaaagcaaggta |
32613954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 538
Target Start/End: Complemental strand, 32531723 - 32531607
Alignment:
| Q |
422 |
gctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcctgcattggtaaaaagc |
521 |
Q |
| |
|
||||||||||||||| | | | |||||||| ||||| | |||||| | | || |||||||| || |||||||| || ||||||||||| ||||||||| |
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| T |
32531723 |
gctaaaagaatgtgaattagcaattccattacagctgcacggtctccgccgctgcatcctaattggagatgagagacaacttcctgcattagtaaaaagc |
32531624 |
T |
|
| Q |
522 |
aaggtatttgatcattg |
538 |
Q |
| |
|
|||||| |||| ||||| |
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|
| T |
32531623 |
aaggtacttgaccattg |
32531607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 32531849 - 32531781
Alignment:
| Q |
299 |
tcaagtggaaaagttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaact |
367 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||| ||||||| |||||||||||||| || ||||| |
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|
| T |
32531849 |
tcaagtggaaaaattttgcttgtcgtatgcttgtctagttttgtgcactgtatcaagctcaattaaact |
32531781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 393 - 527
Target Start/End: Complemental strand, 28856365 - 28856231
Alignment:
| Q |
393 |
aaatttttagttattgatgaagcagctatgctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatg |
492 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||||| || |||||| ||| | |||| |||||||||| |
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|
| T |
28856365 |
aaatttctagttattgatgaagcagctcagctaaaagaatgtgaatcagccattccattacagctgccaggtctccaccatgctgtcctcataggtgatg |
28856266 |
T |
|
| Q |
493 |
agaggcagcttcctgcattggtaaaaagcaaggta |
527 |
Q |
| |
|
|||| || ||||||||| |||| ||||||| |||| |
|
|
| T |
28856265 |
agagacaacttcctgcagtggtcaaaagcacggta |
28856231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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