View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9131_low_1 (Length: 538)
Name: NF9131_low_1
Description: NF9131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9131_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Complemental strand, 42664720 - 42664213
Alignment:
| Q |
11 |
tagattattctctttcgatatcgatacacattcctgaatcaaaattgttatgttgatggacaaaagttgcatcaatattgcacttcaaagtttcattctc |
110 |
Q |
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| T |
42664720 |
tagattcttctctttcgatatggatacacattcctgtatcaaaattgttatgttgatggacaaaagttgcatcaatattgcacttcaaagtttcattctc |
42664621 |
T |
|
| Q |
111 |
cgatatttccatccttgatcaactattcatgtgtcagtattttgcatagtagaaaaccatctaattaactcgagttcattttgcaacaattctcatgaag |
210 |
Q |
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|||| ||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42664620 |
cgatttttccattcttgatcaactattcctgtgtcagtattttgtatagtcgaaaaccatctaa----ctcgagttcattttgcaacaattctcatgaag |
42664525 |
T |
|
| Q |
211 |
tatatacatcccgatgatagtaccgatatttccacattgtcatgtgccttctcgttttgttgcttccagattatcaacagctgcgtcacagattaagaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42664524 |
tatatacatcccgatgatagtaccgatatttccacattgtcatgtgccttctcgttttgttgcttccagattatcaacagctgcgtcacagattaagaaa |
42664425 |
T |
|
| Q |
311 |
gacgttgactatgcaaaattaacaataaattaaacaaaccttcttaaagcttcattcaatccgaattgcgttctcattctccgtccacaaaccctcttcc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42664424 |
gacgttgactatgcaaaattaacaataaattaaacaaaccttcttaaagcttcattcaatccgaattgcgttctcattctccgtccacaaaccctcttcc |
42664325 |
T |
|
| Q |
411 |
atattatatgttttttatgcatgtttgaaacaagtgtggctcatcttcaaacatatcgcaggaaaggcaagtatttgtatatatcgcaaaaagattaatt |
510 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42664324 |
atgttatatgttttttatgcatgtttgaaacaagtgtggctcatcttcaaacatatcgcaggaaaggcaagtatttgtatatatcgcaaaaagattaatt |
42664225 |
T |
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| Q |
511 |
tatttatggttg |
522 |
Q |
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|||||||||||| |
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| T |
42664224 |
tatttatggttg |
42664213 |
T |
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