View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9131_low_3 (Length: 534)
Name: NF9131_low_3
Description: NF9131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9131_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 17 - 518
Target Start/End: Complemental strand, 3278194 - 3277695
Alignment:
| Q |
17 |
agaacaggttagtataattcatttttctcttacttagggttgattaatttttcaaaaatataacatacttacattatttttgttgcagcaccaagcagtg |
116 |
Q |
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| T |
3278194 |
agaacaggttagtataattcatttttctcttacttagggttgattaatttttcaaaaatataacatacttacattatttttgttgcagcaccaagcagtg |
3278095 |
T |
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| Q |
117 |
aaaataagtaacatcacattcagcaatatctatggaacatgtattggggaagatgctgttgtgttggattgtgccaatataggatgttacaatattactc |
216 |
Q |
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| T |
3278094 |
aaaataagtaacatcacattcagcaatatctatggaacatgtattggggaagatgctgttgtgttggattgtgccaagataggatgttacaatattactc |
3277995 |
T |
|
| Q |
217 |
ttaatcaaatcaacattacttcaattaatcgaaagaaaccagcttcggtaaagtgcaaaaatgttcatggaacagccaatgatatcattgcacctcatgg |
316 |
Q |
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| T |
3277994 |
ttaatcaaatcaacattacttcaattaatcgaaagaaaccagcttcggtaaagtgcaaaaatgttcatggaacagccaatgatatcattgcacctcatgg |
3277895 |
T |
|
| Q |
317 |
tctttgtgtaactaattaatgagactttgtttacatctacaaaacataattaatggtagtttttcatgcaaacttgtattaatgtttgtcagttggcaaa |
416 |
Q |
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| T |
3277894 |
tctttgtgtaactaattaatgagactttgtttacatctacaaaacataattaatggtagtttttcatgcaaacttgtattaatgtttgtcagttggcaaa |
3277795 |
T |
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| Q |
417 |
cttatcttatctctatatttctggttatcttttgtaacaattttatctttaaataatactcccgtattagataatctatttgatattttgcactattgat |
516 |
Q |
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| T |
3277794 |
cctatcttatctc--tatttctggttatcttttgtaacaattttttctttaaataatactcccgtattagatgatctatttgatattttgcactattgat |
3277697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 92 - 381
Target Start/End: Complemental strand, 3272391 - 3272102
Alignment:
| Q |
92 |
atttttgttgcagcaccaagcagtgaaaataagtaacatcacattcagcaatatctatggaacatgtattggggaagatgctgttgtgttggattgtgcc |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||| ||||| |||| ||||||||||| |
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| T |
3272391 |
atttttgttgcagcaccaagcagtgaaaataagtaacatcaaattcagtaatatccatggaacatgtattgatgaaaatgctattgtattggattgtgct |
3272292 |
T |
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| Q |
192 |
aatataggatgttacaatattactcttaatcaaatcaacattacttcaattaatcgaaagaaaccagcttcggtaaagtgcaaaaatgttcatggaacag |
291 |
Q |
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| T |
3272291 |
aagatagggtgttatgatatcacccttaatcaaatcaaaattacttcaattaatcgaaagaaaccagcttctgtaaagtgtaaaaatgttcatggaacag |
3272192 |
T |
|
| Q |
292 |
ccaatgatatcattgcacctcatggtctttgtgtaactaattaatgagactttgtttacatctacaaaacataattaatggtagtttttc |
381 |
Q |
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| T |
3272191 |
ccactaatatcatttcacctaaagggtcttgtgtcaatcactaaagagactttgtttatctctacaaaacaaaattaatgctagtttttc |
3272102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 2447969 - 2447848
Alignment:
| Q |
132 |
acattcagcaatatctatggaacatgtattggggaagatgctgttgtgttggattgtgccaatataggatgttacaatattactcttaatcaaatcaaca |
231 |
Q |
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||||| || ||||||||||||||||| | ||| || |||||| || | | ||||||||||||||||| ||| |||||||||| | | |||||||||| |
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| T |
2447969 |
acatttagtaatatctatggaacatgcagtggtgatgatgctatttttctagattgtgccaatatagggtgtgacaatattaccttggaacaaatcaaca |
2447870 |
T |
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| Q |
232 |
ttacttcaattaatcgaaagaa |
253 |
Q |
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|||| ||| || ||| |||||| |
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| T |
2447869 |
ttacctcagttgatccaaagaa |
2447848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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