View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9131_low_4 (Length: 422)

Name: NF9131_low_4
Description: NF9131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9131_low_4
NF9131_low_4
[»] chr6 (15 HSPs)
chr6 (1-369)||(29480908-29481276)
chr6 (5-62)||(29617812-29617869)
chr6 (361-404)||(34715927-34715970)
chr6 (366-403)||(3063507-3063544)
chr6 (366-403)||(24062163-24062200)
chr6 (371-404)||(24387784-24387817)
chr6 (366-403)||(29942467-29942504)
chr6 (372-401)||(31116481-31116510)
chr6 (371-403)||(10344051-10344083)
chr6 (371-403)||(13114399-13114431)
chr6 (371-403)||(14328670-14328702)
chr6 (371-403)||(14421680-14421712)
chr6 (371-403)||(22573803-22573835)
chr6 (365-401)||(22574056-22574092)
chr6 (371-403)||(23270233-23270265)
[»] chr8 (13 HSPs)
chr8 (364-402)||(27164683-27164721)
chr8 (360-403)||(40702034-40702077)
chr8 (358-400)||(43400659-43400701)
chr8 (371-404)||(12330334-12330367)
chr8 (358-403)||(25277730-25277775)
chr8 (366-403)||(29309561-29309598)
chr8 (370-403)||(43400925-43400958)
chr8 (371-403)||(960521-960553)
chr8 (371-403)||(14329624-14329656)
chr8 (371-403)||(27543649-27543681)
chr8 (371-403)||(27987298-27987330)
chr8 (371-403)||(28044600-28044632)
chr8 (371-403)||(34985346-34985378)
[»] chr7 (16 HSPs)
chr7 (371-403)||(26050176-26050208)
chr7 (371-403)||(26059535-26059567)
chr7 (366-404)||(9915647-9915685)
chr7 (366-404)||(9923559-9923597)
chr7 (365-403)||(19272473-19272511)
chr7 (362-403)||(6269520-6269561)
chr7 (366-403)||(23784580-23784617)
chr7 (371-403)||(1594148-1594180)
chr7 (366-402)||(9553396-9553432)
chr7 (371-403)||(13279441-13279473)
chr7 (371-403)||(13797635-13797667)
chr7 (368-400)||(21298012-21298044)
chr7 (371-403)||(23371450-23371482)
chr7 (371-403)||(38193218-38193250)
chr7 (371-403)||(39580190-39580222)
chr7 (363-403)||(44568841-44568881)
[»] chr4 (12 HSPs)
chr4 (363-403)||(24215765-24215805)
chr4 (370-403)||(17290000-17290033)
chr4 (371-403)||(550674-550706)
chr4 (371-403)||(11563541-11563573)
chr4 (371-403)||(20125442-20125474)
chr4 (371-403)||(21780123-21780155)
chr4 (366-402)||(21994323-21994359)
chr4 (366-402)||(29248238-29248274)
chr4 (371-403)||(37273419-37273451)
chr4 (371-403)||(38656079-38656111)
chr4 (371-403)||(50138489-50138521)
chr4 (371-403)||(54130556-54130588)
[»] chr2 (13 HSPs)
chr2 (368-403)||(38385933-38385968)
chr2 (368-402)||(16670497-16670531)
chr2 (371-404)||(16577370-16577403)
chr2 (362-403)||(38210856-38210897)
chr2 (371-403)||(17328093-17328125)
chr2 (371-403)||(19493472-19493504)
chr2 (371-403)||(19641447-19641479)
chr2 (371-403)||(19840040-19840072)
chr2 (371-403)||(22116156-22116188)
chr2 (371-403)||(22535455-22535487)
chr2 (371-403)||(29835103-29835135)
chr2 (371-403)||(34635707-34635739)
chr2 (371-403)||(37147552-37147584)
[»] chr1 (13 HSPs)
chr1 (366-400)||(4646753-4646787)
chr1 (371-404)||(2472607-2472640)
chr1 (371-404)||(9439425-9439458)
chr1 (362-399)||(13154767-13154804)
chr1 (366-403)||(18458826-18458863)
chr1 (366-403)||(26097051-26097088)
chr1 (371-400)||(28724557-28724586)
chr1 (371-403)||(10028001-10028033)
chr1 (371-403)||(24987609-24987641)
chr1 (371-403)||(25235775-25235807)
chr1 (371-403)||(26095815-26095847)
chr1 (371-403)||(32131927-32131959)
chr1 (371-403)||(47022093-47022125)
[»] chr5 (5 HSPs)
chr5 (371-404)||(12399609-12399642)
chr5 (371-403)||(10976771-10976803)
chr5 (371-403)||(22551523-22551555)
chr5 (371-403)||(29104445-29104477)
chr5 (371-403)||(38482319-38482351)
[»] chr3 (8 HSPs)
chr3 (362-403)||(22949238-22949279)
chr3 (362-403)||(51460787-51460828)
chr3 (371-403)||(6510216-6510248)
chr3 (363-403)||(18140933-18140973)
chr3 (371-403)||(47115586-47115618)
chr3 (371-403)||(49872973-49873005)
chr3 (371-403)||(49880761-49880793)
chr3 (371-403)||(54567767-54567799)
[»] scaffold0769 (1 HSPs)
scaffold0769 (371-403)||(4175-4207)
[»] scaffold0384 (1 HSPs)
scaffold0384 (371-403)||(4451-4483)
[»] scaffold0142 (1 HSPs)
scaffold0142 (371-403)||(34850-34882)
[»] scaffold0032 (1 HSPs)
scaffold0032 (371-403)||(91051-91083)
[»] scaffold0031 (1 HSPs)
scaffold0031 (371-403)||(1828-1860)
[»] scaffold0010 (1 HSPs)
scaffold0010 (371-403)||(26309-26341)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 29481276 - 29480908
Alignment:
Q  1 ttcgatttatttttccggttttttacaatattaaaccttctcatgtgcgacaccaaagtggaccttttgaagctgcattcgtaaagcacgaggagaggtt 100  Q
    ||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29481276 ttcgatttattgttccggtttattacaatattgaagcttctcatgtgcgacaccaaagtggaccttttgaagctgcattcgtaaagcacgaggagaggtt 29481177  T
Q  101 ccatgaaaacaaggagaaagtgcttaaatggaaaactgctctatctcaagtagctaacttgaccgggtggcatttcgacgggtataattactctatctct 200  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29481176 ccatgaaaacagggagaaagtgcttaaatggaaaaccgctctatctcaagtagctaacttgcccgggtggcatttcgacgggtataattactctatctct 29481077  T
Q  201 tttatcttatataaattttgctcattgtccatttctatatggtttttattcttcaaatctatagtttcattttcctgtgagctatgattatataaattta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29481076 tttatcttatataaattttgctcattgtccatttctatatggtttttattcttcaaatctatagtttcattttcctgtgagctatgaatatataaattta 29480977  T
Q  301 tggtccttcatctttgttcgcaaatctatgcttgcaattgaatcttagattttaaacttaaaaaattaa 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29480976 tggtccttcatctttgttcgcaaatctatgcttgcaattgaatcttagattttaagcttaaaaaattaa 29480908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 29617812 - 29617869
Alignment:
Q  5 atttatttttccggttttttacaatattaaaccttctcatgtgcgacaccaaagtgga 62  Q
    ||||||| |||||||||||||||| ||  | ||||||||||||||| |||||||||||    
T  29617812 atttattattccggttttttacaacatagatccttctcatgtgcgaaaccaaagtgga 29617869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 404
Target Start/End: Complemental strand, 34715970 - 34715927
Alignment:
Q  361 aaaaattaaaggttaataggtctttaccccctctaatataggtt 404  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||    
T  34715970 aaaaaataaaggttaatagttctttaccccctgtaatataggtt 34715927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 3063544 - 3063507
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatataggt 403  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  3063544 ttaagggttaataggtctttaccccctgtaatataggt 3063507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 24062163 - 24062200
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatataggt 403  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  24062163 ttaagggttaataggtctttaccccctataatataggt 24062200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 24387817 - 24387784
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggtt 404  Q
    |||||||||||||||||||||| |||||||||||    
T  24387817 ggttaataggtctttaccccctgtaatataggtt 24387784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 29942504 - 29942467
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatataggt 403  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  29942504 ttaagggttaataggtctttaccccctgtaatataggt 29942467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 401
Target Start/End: Original strand, 31116481 - 31116510
Alignment:
Q  372 gttaataggtctttaccccctctaatatag 401  Q
    ||||||||||||||||||||||||||||||    
T  31116481 gttaataggtctttaccccctctaatatag 31116510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 10344051 - 10344083
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  10344051 ggttaataggtctttaccccctgtaatataggt 10344083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 13114399 - 13114431
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  13114399 ggttaataggtctttaccccctgtaatataggt 13114431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 14328702 - 14328670
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  14328702 ggttaataggtctttaccccctgtaatataggt 14328670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 14421712 - 14421680
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  14421712 ggttaataggtctttaccccctgtaatataggt 14421680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 22573803 - 22573835
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  22573803 ggttaataggtctttaccccctataatataggt 22573835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 22574092 - 22574056
Alignment:
Q  365 attaaaggttaataggtctttaccccctctaatatag 401  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  22574092 attaagggttaataggtctttaccccctgtaatatag 22574056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 23270265 - 23270233
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  23270265 ggttaataggtctttaccccctttaatataggt 23270233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 27164721 - 27164683
Alignment:
Q  364 aattaaaggttaataggtctttaccccctctaatatagg 402  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  27164721 aattaaaggttaataggtctttaccccctgtaatatagg 27164683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 40702077 - 40702034
Alignment:
Q  360 aaaaaattaaaggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||    
T  40702077 aaaaaattaagggttaataggcctttaccccctgtaatataggt 40702034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 43400659 - 43400701
Alignment:
Q  358 ttaaaaaattaaaggttaataggtctttaccccctctaatata 400  Q
    ||||||| |||| |||||||||||||||||||||| |||||||    
T  43400659 ttaaaaatttaagggttaataggtctttaccccctgtaatata 43400701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Original strand, 12330334 - 12330367
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggtt 404  Q
    |||||||||||||||||||||| |||||||||||    
T  12330334 ggttaataggtctttaccccctgtaatataggtt 12330367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 25277775 - 25277730
Alignment:
Q  358 ttaaaaaattaaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||||||  || |||||||||||||||||||||| ||||||||||    
T  25277775 ttaaaaaaaaaagggttaataggtctttaccccctgtaatataggt 25277730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 29309561 - 29309598
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatataggt 403  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  29309561 ttaagggttaataggtctttaccccctgtaatataggt 29309598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 43400958 - 43400925
Alignment:
Q  370 aggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||| |||||||||||||    
T  43400958 aggttaataggtctttaccctctctaatataggt 43400925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 960553 - 960521
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  960553 ggttaataggtctttaccccctgtaatataggt 960521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 14329656 - 14329624
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  14329656 ggttaataggtctttaccccctgtaatataggt 14329624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 27543681 - 27543649
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  27543681 ggttaataggtctttaccccctgtaatataggt 27543649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 27987298 - 27987330
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  27987298 ggttaataggtctttaccccctataatataggt 27987330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 28044600 - 28044632
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  28044600 ggttaataggtctttaccccctataatataggt 28044632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 34985378 - 34985346
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  34985378 ggttaataggtctttaccccctgtaatataggt 34985346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 26050176 - 26050208
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||||||||||||||    
T  26050176 ggttaataggtctttaccccctctaatataggt 26050208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 26059535 - 26059567
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||||||||||||||    
T  26059535 ggttaataggtctttaccccctctaatataggt 26059567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Original strand, 9915647 - 9915685
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatataggtt 404  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  9915647 ttaagggttaataggtctttaccccctgtaatataggtt 9915685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Original strand, 9923559 - 9923597
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatataggtt 404  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  9923559 ttaagggttaataggtctttaccccctgtaatataggtt 9923597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 19272511 - 19272473
Alignment:
Q  365 attaaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  19272511 attaagggttaataggtctttaccccctgtaatataggt 19272473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 6269520 - 6269561
Alignment:
Q  362 aaaattaaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||| || |||||||||||||||||||||| ||||||||||    
T  6269520 aaaataaagggttaataggtctttaccccctgtaatataggt 6269561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 23784580 - 23784617
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatataggt 403  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  23784580 ttaagggttaataggtctttaccccctgtaatataggt 23784617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 1594180 - 1594148
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  1594180 ggttaataggtctttaccccctgtaatataggt 1594148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 9553396 - 9553432
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatatagg 402  Q
    |||| |||||||||||||||||||||| |||||||||    
T  9553396 ttaagggttaataggtctttaccccctgtaatatagg 9553432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 13279473 - 13279441
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  13279473 ggttaataggtctttaccccctgtaatataggt 13279441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 13797667 - 13797635
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  13797667 ggttaataggtctttaccccctgtaatataggt 13797635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 21298012 - 21298044
Alignment:
Q  368 aaaggttaataggtctttaccccctctaatata 400  Q
    ||||||||||||||||||||||||| |||||||    
T  21298012 aaaggttaataggtctttaccccctgtaatata 21298044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 23371450 - 23371482
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  23371450 ggttaataggtctttaccccctgtaatataggt 23371482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 38193250 - 38193218
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  38193250 ggttaataggtctttaccccctgtaatataggt 38193218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 39580222 - 39580190
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  39580222 ggttaataggtctttaccccctgtaatataggt 39580190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 44568841 - 44568881
Alignment:
Q  363 aaattaaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  44568841 aaatttaaggttaatagatctttaccccctgtaatataggt 44568881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 24215805 - 24215765
Alignment:
Q  363 aaattaaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  24215805 aaattaagggttaataggtctttaccccctgtaatataggt 24215765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 17290033 - 17290000
Alignment:
Q  370 aggttaataggtctttaccccctctaatataggt 403  Q
    ||||||||||||||||||||||| ||||||||||    
T  17290033 aggttaataggtctttaccccctataatataggt 17290000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 550674 - 550706
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  550674 ggttaataggtctttaccccctgtaatataggt 550706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 11563573 - 11563541
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  11563573 ggttaataggtctttaccccctgtaatataggt 11563541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 20125474 - 20125442
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  20125474 ggttaataggtctttaccccctgtaatataggt 20125442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 21780123 - 21780155
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  21780123 ggttaataggtctttaccccctgtaatataggt 21780155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 21994323 - 21994359
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatatagg 402  Q
    |||| |||||||||||||||||||||| |||||||||    
T  21994323 ttaacggttaataggtctttaccccctgtaatatagg 21994359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 29248238 - 29248274
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatatagg 402  Q
    |||| |||||||||||||||||||||| |||||||||    
T  29248238 ttaagggttaataggtctttaccccctgtaatatagg 29248274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 37273451 - 37273419
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  37273451 ggttaataggtctttaccccctgtaatataggt 37273419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 38656111 - 38656079
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  38656111 ggttaataggtctttaccccctataatataggt 38656079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 50138489 - 50138521
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  50138489 ggttaataggtctttaccccctgtaatataggt 50138521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 54130588 - 54130556
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||| ||||||||||||||||    
T  54130588 ggttaataggtctttatcccctctaatataggt 54130556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 368 - 403
Target Start/End: Original strand, 38385933 - 38385968
Alignment:
Q  368 aaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||||||||||||||||||||||| ||||||||||    
T  38385933 aaaggttaataggtctttaccccctgtaatataggt 38385968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 402
Target Start/End: Original strand, 16670497 - 16670531
Alignment:
Q  368 aaaggttaataggtctttaccccctctaatatagg 402  Q
    ||||||||||||||||||||||||| |||||||||    
T  16670497 aaaggttaataggtctttaccccctgtaatatagg 16670531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 16577403 - 16577370
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggtt 404  Q
    |||||||||||||||||||||| |||||||||||    
T  16577403 ggttaataggtctttaccccctgtaatataggtt 16577370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 38210856 - 38210897
Alignment:
Q  362 aaaattaaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||| || |||||||||||||||||||||| ||||||||||    
T  38210856 aaaataaatggttaataggtctttaccccctgtaatataggt 38210897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 17328093 - 17328125
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  17328093 ggttaataggtctttaccccctgtaatataggt 17328125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 19493504 - 19493472
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  19493504 ggttaataggtctttaccccctgtaatataggt 19493472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 19641447 - 19641479
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  19641447 ggttaataggtctttaccccctgtaatataggt 19641479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 19840040 - 19840072
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  19840040 ggttaataggtctttaccccctgtaatataggt 19840072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 22116156 - 22116188
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  22116156 ggttaataggtctttaccccctgtaatataggt 22116188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 22535455 - 22535487
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  22535455 ggttaataggtctttaccccctttaatataggt 22535487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 29835103 - 29835135
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  29835103 ggttaataggtctttaccccctgtaatataggt 29835135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 34635707 - 34635739
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  34635707 ggttaataggtctttaccccctgtaatataggt 34635739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 37147552 - 37147584
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  37147552 ggttaataggtctttaccccctgtaatataggt 37147584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 400
Target Start/End: Original strand, 4646753 - 4646787
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatata 400  Q
    |||| ||||||||||||||||||||||||||||||    
T  4646753 ttaagggttaataggtctttaccccctctaatata 4646787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 2472640 - 2472607
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggtt 404  Q
    |||||||||||||||||||||| |||||||||||    
T  2472640 ggttaataggtctttaccccctgtaatataggtt 2472607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 9439458 - 9439425
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggtt 404  Q
    |||||||||||||||||||||| |||||||||||    
T  9439458 ggttaataggtctttaccccctgtaatataggtt 9439425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 13154804 - 13154767
Alignment:
Q  362 aaaattaaaggttaataggtctttaccccctctaatat 399  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  13154804 aaaattaagggttaataggtctttaccccctataatat 13154767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 18458863 - 18458826
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatataggt 403  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  18458863 ttaagggttaataggtctttaccccctgtaatataggt 18458826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 26097088 - 26097051
Alignment:
Q  366 ttaaaggttaataggtctttaccccctctaatataggt 403  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  26097088 ttaagggttaataggtctttaccccctgtaatataggt 26097051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 400
Target Start/End: Complemental strand, 28724586 - 28724557
Alignment:
Q  371 ggttaataggtctttaccccctctaatata 400  Q
    ||||||||||||||||||||||||||||||    
T  28724586 ggttaataggtctttaccccctctaatata 28724557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 10028033 - 10028001
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  10028033 ggttaataggtctttaccccctgtaatataggt 10028001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 24987609 - 24987641
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  24987609 ggttaataggtctttaccccctgtaatataggt 24987641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 25235775 - 25235807
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  25235775 ggttaataggtctttaccccctgtaatataggt 25235807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 26095815 - 26095847
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  26095815 ggttaataggtctttaccccctgtaatataggt 26095847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 32131959 - 32131927
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  32131959 ggttaataggtctttaccccctgtaatataggt 32131927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 47022125 - 47022093
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  47022125 ggttaataggtctttaccccctgtaatataggt 47022093  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 12399642 - 12399609
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggtt 404  Q
    |||||||||||||||||||||| |||||||||||    
T  12399642 ggttaataggtctttaccccctgtaatataggtt 12399609  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 10976803 - 10976771
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  10976803 ggttaataggtctttaccccctgtaatataggt 10976771  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 22551523 - 22551555
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  22551523 ggttaataggtctttaccccctgtaatataggt 22551555  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 29104445 - 29104477
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  29104445 ggttaataggtctttaccccctgtaatataggt 29104477  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 38482319 - 38482351
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  38482319 ggttaataggtctttaccccctgtaatataggt 38482351  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 22949238 - 22949279
Alignment:
Q  362 aaaattaaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||||||  ||||||||||||||||||||| ||||||||||    
T  22949238 aaaattaagagttaataggtctttaccccctgtaatataggt 22949279  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 403
Target Start/End: Complemental strand, 51460828 - 51460787
Alignment:
Q  362 aaaattaaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||| || |||||||||||||||||||||| ||||||||||    
T  51460828 aaaatgaagggttaataggtctttaccccctgtaatataggt 51460787  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 6510216 - 6510248
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  6510216 ggttaataggtctttaccccctgtaatataggt 6510248  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 18140933 - 18140973
Alignment:
Q  363 aaattaaaggttaataggtctttaccccctctaatataggt 403  Q
    ||||||| |||||||||| ||||||||||| ||||||||||    
T  18140933 aaattaagggttaataggcctttaccccctgtaatataggt 18140973  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 47115618 - 47115586
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  47115618 ggttaataggtctttaccccctgtaatataggt 47115586  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 49873005 - 49872973
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  49873005 ggttaataggtctttaccccctgtaatataggt 49872973  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 49880793 - 49880761
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  49880793 ggttaataggtctttaccccctgtaatataggt 49880761  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 54567799 - 54567767
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  54567799 ggttaataggtctttaccccctgtaatataggt 54567767  T

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Target: scaffold0769 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 4207 - 4175
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  4207 ggttaataggtctttaccccctgtaatataggt 4175  T

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Target: scaffold0384 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 4483 - 4451
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  4483 ggttaataggtctttaccccctgtaatataggt 4451  T

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Target: scaffold0142 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 34882 - 34850
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  34882 ggttaataggtctttaccccctgtaatataggt 34850  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 91051 - 91083
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  91051 ggttaataggtctttaccccctgtaatataggt 91083  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 1828 - 1860
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  1828 ggttaataggtctttaccccctgtaatataggt 1860  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 26309 - 26341
Alignment:
Q  371 ggttaataggtctttaccccctctaatataggt 403  Q
    |||||||||||||||||||||| ||||||||||    
T  26309 ggttaataggtctttaccccctgtaatataggt 26341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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