View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9131_low_7 (Length: 323)
Name: NF9131_low_7
Description: NF9131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9131_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 42397297 - 42397522
Alignment:
| Q |
1 |
aatgtcacacaccttttagaaacagttgaaaggagagtaattagaggctcaaatatctccttttataggatcataataatttaccatctttacaaaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42397297 |
aatgtcacacaccttttagaaacagttgaaaggagagtaattagaggctcaaatatctccttttataggatcataataatttaccatctttacaaaaaat |
42397396 |
T |
|
| Q |
101 |
agnnnnnnnngactaaatccaacttaacgcta-cnnnnnnnaagccacaacttccttcatgtcactggatgaacatgaagttagggaactaagcaatatg |
199 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42397397 |
ag-tttttttgactaaatccaacttaacgctatttttttttaagccacaacttccttcatgtcactggatgaacatgaagttagggaactaagcaatatg |
42397495 |
T |
|
| Q |
200 |
caaaatatagcaataaactaacatcac |
226 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
42397496 |
caaaatatagcaataaacaaacatcac |
42397522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University