View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9132_high_2 (Length: 521)
Name: NF9132_high_2
Description: NF9132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9132_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 34604853 - 34605190
Alignment:
| Q |
18 |
tcatttgacagctctacttacgggtaccatgattaacttccatgctcacattctgctgtaatttgtttaactaactccaactagaacaacaaaggtgatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
34604853 |
tcatttgacagctctacttacgggtaccatgattaacttctatgctcacattctgccgtaatttgcttaactaactccaactagaacaacaagggtgatt |
34604952 |
T |
|
| Q |
118 |
ttgagacgccctccttttggatcatttttataacttcagaagaatatatttcaacgagaacttgggataaacctctttccagcaagggagccacattcaa |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34604953 |
ttgagacgccccccttttggatcatttttataacttcagaagaatatatttcaacgagaacttgggataaacctctttccagcaagggagccacattcaa |
34605052 |
T |
|
| Q |
218 |
cactgtttgtctaattgaagatagttaaacaaattattacaacataaggtgaaactcgagacaaggaccggaggtaaaccatgtctttcgcaaaggagtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
34605053 |
cactgtttgtctaattgaagatagttaaacaaattattacaacataaggtgaaactcgagacaaggaccggagataaatcatgtctttcgcaaaggagtt |
34605152 |
T |
|
| Q |
318 |
aagataattttcatttatgatcttttctatttctttca |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34605153 |
aagataattttcatttatgatcttttctatttctttca |
34605190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 397 - 507
Target Start/End: Original strand, 34605212 - 34605322
Alignment:
| Q |
397 |
agttaatgatggttggatccacttcaacttcagctgatagaagatatataacaactaattatgtgatgatttgtgaattacacccaaatgtatctagtag |
496 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34605212 |
agttaacgatggttggatccacttcaacttcagctgatagaagatatataacaactaattatgtgatgatttgtgaattacacccaaatgtatctagtag |
34605311 |
T |
|
| Q |
497 |
ccaagaataat |
507 |
Q |
| |
|
||||| ||||| |
|
|
| T |
34605312 |
ccaaggataat |
34605322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University