View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9132_low_13 (Length: 421)

Name: NF9132_low_13
Description: NF9132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9132_low_13
NF9132_low_13
[»] chr1 (1 HSPs)
chr1 (15-177)||(19768832-19768999)
[»] chr3 (3 HSPs)
chr3 (360-402)||(926182-926224)
chr3 (363-402)||(44702625-44702664)
chr3 (226-268)||(5577985-5578027)
[»] chr4 (2 HSPs)
chr4 (362-402)||(5454676-5454716)
chr4 (209-252)||(55819889-55819932)
[»] chr5 (2 HSPs)
chr5 (360-402)||(41391510-41391552)
chr5 (360-402)||(43026125-43026167)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 19768999 - 19768832
Alignment:
Q  15 cagagaaggatttgcgatctggaagaagaaaacctcttctttgataa-----agaggatttgaagaaagggtctcacaatttgggtgggataggtcgatg 109  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768999 cagagaaggatttgcgatttggaagaagaagacctcttctttgataagataaagaggatttgaagaaagggtctcacaatttgggtgggataggtcgatg 19768900  T
Q  110 gtggtgttaagagaatgggtgtgagagaaaagggagagagagggggttaggtcagagtgaaggttttt 177  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19768899 gtggcgttaagagaatgggtgtgagagaaaagggagagagagggggttaggtcagagtgaaggatttt 19768832  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 402
Target Start/End: Complemental strand, 926224 - 926182
Alignment:
Q  360 atatacattatagatgcaatatattgatattatagatgcaaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  926224 atatacattatagatgcaatatattgatattatagatgcaaat 926182  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 44702625 - 44702664
Alignment:
Q  363 tacattatagatgcaatatattgatattatagatgcaaat 402  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44702625 tacattatagatgcaatatattgatattatagatgcaaat 44702664  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 5577985 - 5578027
Alignment:
Q  226 agaaaatacaggattggaaaatgctatattttcatcgtgtgta 268  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  5577985 agaaaatataggattggaaaatgctatattttcatagtgtgta 5578027  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 5454716 - 5454676
Alignment:
Q  362 atacattatagatgcaatatattgatattatagatgcaaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5454716 atacattatagatgcaatatattgatattatagatgcaaat 5454676  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 55819889 - 55819932
Alignment:
Q  209 gtccatatgggaattggagaaaatacaggattggaaaatgctat 252  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  55819889 gtccataagggaattggagaaaatacaggattggaaaatgctat 55819932  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 402
Target Start/End: Original strand, 41391510 - 41391552
Alignment:
Q  360 atatacattatagatgcaatatattgatattatagatgcaaat 402  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  41391510 atatacattatagatgcattatattgatattatagatgcaaat 41391552  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 402
Target Start/End: Original strand, 43026125 - 43026167
Alignment:
Q  360 atatacattatagatgcaatatattgatattatagatgcaaat 402  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  43026125 atatacgttatagatgcaatatattgatattatagatgcaaat 43026167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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