View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9132_low_15 (Length: 373)

Name: NF9132_low_15
Description: NF9132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9132_low_15
NF9132_low_15
[»] chr8 (14 HSPs)
chr8 (48-357)||(39099544-39099856)
chr8 (227-292)||(13964430-13964495)
chr8 (216-268)||(44098992-44099044)
chr8 (227-309)||(27502912-27502992)
chr8 (227-285)||(41753769-41753827)
chr8 (225-270)||(7484703-7484748)
chr8 (227-283)||(10934676-10934732)
chr8 (227-270)||(3385486-3385529)
chr8 (227-290)||(11295675-11295738)
chr8 (227-284)||(28882736-28882793)
chr8 (227-286)||(6260678-6260738)
chr8 (218-290)||(7428894-7428966)
chr8 (227-255)||(24471195-24471223)
chr8 (220-252)||(27503005-27503037)
[»] chr6 (13 HSPs)
chr6 (227-292)||(34170089-34170154)
chr6 (227-285)||(12218456-12218514)
chr6 (227-285)||(12104756-12104814)
chr6 (225-285)||(15517161-15517221)
chr6 (227-309)||(26527239-26527319)
chr6 (227-270)||(34379821-34379864)
chr6 (227-321)||(8449611-8449705)
chr6 (227-321)||(8458415-8458509)
chr6 (227-285)||(18886319-18886377)
chr6 (227-280)||(29072144-29072197)
chr6 (227-280)||(29104717-29104770)
chr6 (225-270)||(29419873-29419918)
chr6 (225-282)||(32124198-32124255)
[»] chr1 (18 HSPs)
chr1 (227-291)||(14967290-14967354)
chr1 (217-292)||(41007741-41007816)
chr1 (218-292)||(3549781-3549855)
chr1 (227-285)||(34953907-34953965)
chr1 (227-285)||(43738616-43738674)
chr1 (225-285)||(3549850-3549910)
chr1 (227-270)||(24981927-24981970)
chr1 (223-277)||(22558942-22558996)
chr1 (236-290)||(25391901-25391955)
chr1 (225-322)||(36163994-36164090)
chr1 (222-252)||(39420413-39420443)
chr1 (227-285)||(50550190-50550248)
chr1 (225-278)||(6340648-6340701)
chr1 (225-270)||(29043463-29043508)
chr1 (228-285)||(33765858-33765915)
chr1 (228-285)||(35544545-35544602)
chr1 (225-285)||(8396999-8397059)
chr1 (248-319)||(34184473-34184542)
[»] chr5 (8 HSPs)
chr5 (229-292)||(31785939-31786002)
chr5 (225-285)||(7505167-7505227)
chr5 (225-285)||(11795807-11795867)
chr5 (227-270)||(3100416-3100459)
chr5 (230-292)||(11795750-11795812)
chr5 (227-292)||(71270-71335)
chr5 (225-270)||(13356223-13356268)
chr5 (225-290)||(15712187-15712252)
[»] chr2 (18 HSPs)
chr2 (227-285)||(7079381-7079439)
chr2 (225-292)||(44089490-44089557)
chr2 (227-285)||(1961380-1961438)
chr2 (225-283)||(38181769-38181827)
chr2 (227-292)||(32308323-32308388)
chr2 (227-292)||(32800718-32800783)
chr2 (227-270)||(27331845-27331888)
chr2 (227-270)||(31024182-31024225)
chr2 (229-276)||(31613410-31613457)
chr2 (226-257)||(34893796-34893827)
chr2 (227-281)||(11726570-11726624)
chr2 (227-285)||(15119788-15119846)
chr2 (229-283)||(21183400-21183454)
chr2 (229-270)||(19268073-19268114)
chr2 (227-292)||(27328312-27328376)
chr2 (227-292)||(36547352-36547417)
chr2 (236-292)||(13295449-13295505)
chr2 (244-288)||(38708731-38708775)
[»] scaffold0036 (1 HSPs)
scaffold0036 (225-285)||(89607-89667)
[»] chr4 (17 HSPs)
chr4 (225-285)||(39533827-39533887)
chr4 (225-268)||(8311325-8311368)
chr4 (227-285)||(40952359-40952417)
chr4 (227-270)||(47181570-47181613)
chr4 (226-292)||(7740554-7740620)
chr4 (227-285)||(22493647-22493705)
chr4 (225-270)||(2401049-2401094)
chr4 (227-292)||(18488584-18488649)
chr4 (227-288)||(19595506-19595567)
chr4 (247-288)||(19596066-19596107)
chr4 (225-290)||(27537065-27537130)
chr4 (227-284)||(29006907-29006964)
chr4 (225-273)||(483988-484036)
chr4 (248-320)||(5924531-5924601)
chr4 (227-283)||(16578582-16578638)
chr4 (225-285)||(25022527-25022587)
chr4 (222-286)||(44171440-44171504)
[»] scaffold0065 (2 HSPs)
scaffold0065 (222-289)||(36921-36988)
scaffold0065 (225-270)||(39195-39240)
[»] scaffold0019 (1 HSPs)
scaffold0019 (222-284)||(42769-42831)
[»] chr7 (10 HSPs)
chr7 (230-292)||(14995879-14995941)
chr7 (227-283)||(2943223-2943279)
chr7 (227-283)||(25245216-25245272)
chr7 (227-270)||(23818435-23818478)
chr7 (222-285)||(31814704-31814767)
chr7 (223-285)||(21096194-21096256)
chr7 (227-285)||(27330517-27330575)
chr7 (227-284)||(10095730-10095787)
chr7 (227-292)||(12274820-12274885)
chr7 (226-270)||(28229104-28229148)
[»] chr3 (17 HSPs)
chr3 (227-285)||(10872683-10872741)
chr3 (227-285)||(30519669-30519727)
chr3 (227-285)||(37897753-37897811)
chr3 (227-285)||(40639866-40639924)
chr3 (227-285)||(52215951-52216009)
chr3 (227-284)||(40639781-40639838)
chr3 (222-258)||(27601249-27601285)
chr3 (227-278)||(8150010-8150061)
chr3 (225-288)||(29241548-29241611)
chr3 (225-292)||(37897691-37897758)
chr3 (227-270)||(54595801-54595844)
chr3 (227-320)||(331836-331927)
chr3 (225-322)||(334674-334769)
chr3 (227-285)||(27224591-27224649)
chr3 (230-322)||(4980287-4980377)
chr3 (227-283)||(24075458-24075514)
chr3 (225-285)||(24270462-24270522)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 48 - 357
Target Start/End: Complemental strand, 39099856 - 39099544
Alignment:
Q  48 ttagtatgttagttgttatgttaattttttgaatcataaacctctatctccataatcgttcaaaccaattgagctat----ctaacgnnnnnnnncatat 143  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    ||||||         ||||    
T  39099856 ttagtatgttaattgttatgttaattttttgaatcataaacctctatctccataatcgctcaaaccaattgagctatatatctaacgaaaaaaat-atat 39099758  T
Q  144 tgctattcaactttttattcctaataatataaatttaacattgcaatctcaaccatcaaactttgtgaaatattttcagttattattataagcaaaaatc 243  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39099757 tgttattcaactttttattcctaataatataaatttaacattgcaatctcaaccgtcaaactttgtgaaatattttcagttattattataagcaaaaatc 39099658  T
Q  244 aacattttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattatttattcaataaatctnnnnnnntgcatttttgctta 343  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||    
T  39099657 aacattttaaattcagtcaataaataatatatgtgatctatattataaagactacacacattatttattcaataaatct-aaaaaatgcatttttgctta 39099559  T
Q  344 taata-gttgtcatt 357  Q
    ||||| |||||||||    
T  39099558 taataggttgtcatt 39099544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 13964430 - 13964495
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||||||||||||||||||||||||||| |||||||||||  |||||| |||||||||||||    
T  13964430 tattataagcaaaaatcaacattttaaattcattcaataaatgatgtatgtggtctatattataga 13964495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 44098992 - 44099044
Alignment:
Q  216 ttttcagttattattataagcaaaaatcaacattttaaattcagtcaataaat 268  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| |||||||||    
T  44098992 tttttagtcattattataaacaaaaatcaacattttaaattcattcaataaat 44099044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 27502912 - 27502992
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattattt 309  Q
    |||||||||||||||| ||||||||||||||| ||| |||||||  |||||||| ||||  ||| |||||||| | |||||||    
T  27502912 tattataagcaaaaattaacattttaaattcattcattaaatgatgtatgtgatttata--ataaagactacatatattattt 27502992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 41753769 - 41753827
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||  |||||| ||||||    
T  41753769 tattataagcaaaattcaacattttaaattcattcattaaatgatgtatgtggtctata 41753827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 7484748 - 7484703
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||||||||||||| ||||| ||| |||||||    
T  7484748 attattataagcaaaaatcaacattttagattcattcattaaatga 7484703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 10934732 - 10934676
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatcta 283  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||  |||||| ||||    
T  10934732 tattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtcta 10934676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 3385486 - 3385529
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||||||||||||||| | ||| |||||||    
T  3385486 tattataagcaaaaatcaacattttaaatttattcattaaatga 3385529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 11295675 - 11295738
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattata 290  Q
    |||||||||||||||||||||||||| || || ||| |||||||  |||||| ||| |||||||    
T  11295675 tattataagcaaaaatcaacattttagatacattcattaaatgatgtatgtggtctttattata 11295738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 28882793 - 28882736
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctat 284  Q
    |||||||||||||||||||| |||||  || | ||||||||||| ||||||| |||||    
T  28882793 tattataagcaaaaatcaaccttttaggtttattcaataaatgatatatgtggtctat 28882736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 6260738 - 6260678
Alignment:
Q  227 tattataagcaaaaat-caacattttaaattcagtcaataaatgaaatatgtgatctatat 286  Q
    |||||||||||||||| ||   ||||| ||||| |||||||||||||||| ||||||||||    
T  6260738 tattataagcaaaaattcatttttttagattcattcaataaatgaaatatatgatctatat 6260678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 7428894 - 7428966
Alignment:
Q  218 ttcagttattattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattata 290  Q
    |||||||| ||||||||||||||||  | ||||||  |||| |||||||||||  ||||||| ||| ||||||    
T  7428894 ttcagttactattataagcaaaaattcatattttaggttcattcaataaatgatgtatgtgacctacattata 7428966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 24471195 - 24471223
Alignment:
Q  227 tattataagcaaaaatcaacattttaaat 255  Q
    |||||||||||||||||||||||||||||    
T  24471195 tattataagcaaaaatcaacattttaaat 24471223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 27503037 - 27503005
Alignment:
Q  220 cagttattattataagcaaaaatcaacatttta 252  Q
    |||| ||||||||||||||||||||||||||||    
T  27503037 cagtcattattataagcaaaaatcaacatttta 27503005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 34170089 - 34170154
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||| ||||||||||||||||| ||||| ||| |||||||  ||||||||||||||||||||    
T  34170089 tattataaacaaaaatcaacattttagattcattcattaaatgatgtatgtgatctatattataga 34170154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 12218456 - 12218514
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||| |||||| |||||||    
T  12218456 tattataagcaaaaatcaacattttatattcattcattaaatgatatatgtaatctata 12218514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 12104756 - 12104814
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||||||||||||||| | | |||||||  |||||||| ||||    
T  12104756 tattataagcaaaaatcaacattttaaattcatttattaaatgatgtatgtgatttata 12104814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 15517221 - 15517161
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||||||||||||||| |||||| ||||| ||| |||||||  |||||| ||||||    
T  15517221 attattataagcaaaaatcaatattttagattcattcattaaatgatgtatgtggtctata 15517161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 26527319 - 26527239
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattattt 309  Q
    |||||||||||||||| ||||||||| ||||| ||| |||||||  |||||| | ||||  ||| |||||||| |||||||||    
T  26527319 tattataagcaaaaattaacattttagattcattcattaaatgatgtatgtggtttata--ataaagactacatacattattt 26527239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 34379864 - 34379821
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||    
T  34379864 tattataagcaaaaatcaacattttagattcattcattaaatga 34379821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 8449705 - 8449611
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattatttattcaataaatc 321  Q
    |||||||||||||||| || |||||| ||||| ||||| |||||   || ||||||  |||||| |||| ||| |||| ||||||| ||||||||    
T  8449705 tattataagcaaaaattaatattttagattcattcaattaatgatgcatatgatcttgattatatagaccacatacatcatttattgaataaatc 8449611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 8458509 - 8458415
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattatttattcaataaatc 321  Q
    |||||||||||||||| || |||||| ||||| ||||| |||||   || ||||||  |||||| |||| ||| |||| ||||||| ||||||||    
T  8458509 tattataagcaaaaattaatattttagattcattcaattaatgatgcatatgatcttgattatatagaccacatacatcatttattgaataaatc 8458415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 18886319 - 18886377
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||| || |||||| ||||| ||| ||||||| ||||||| ||||||    
T  18886319 tattataagcaaaaattaatattttagattcattcattaaatgatatatgtggtctata 18886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 29072197 - 29072144
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgat 280  Q
    ||||| |||||||||| |||||||||||||||  ||||||||||  ||||||||    
T  29072197 tattaaaagcaaaaattaacattttaaattcatacaataaatgatgtatgtgat 29072144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 29104770 - 29104717
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgat 280  Q
    ||||| |||||||||| |||||||||||||||  ||||||||||  ||||||||    
T  29104770 tattaaaagcaaaaattaacattttaaattcatacaataaatgatgtatgtgat 29104717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 29419918 - 29419873
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    ||||||||||| |||||||||||||||| ||||| ||| |||||||    
T  29419918 attattataagtaaaaatcaacattttagattcattcattaaatga 29419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 32124255 - 32124198
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatct 282  Q
    ||||||||||||||||||  || ||||| ||||| ||||||||| | |||||||||||    
T  32124255 attattataagcaaaaattgactttttagattcattcaataaataatatatgtgatct 32124198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 14967354 - 14967290
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattatag 291  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||  |||||||||| ||||||||    
T  14967354 tattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtgatctttattatag 14967290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 41007816 - 41007741
Alignment:
Q  217 tttcagttattattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    ||||||||| |||||||||||||| ||||||||||| ||||| ||| |||||||  |||||| ||| |||||||||    
T  41007816 tttcagttactattataagcaaaattcaacattttagattcattcattaaatgatgtatgtggtctttattataga 41007741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 3549781 - 3549855
Alignment:
Q  218 ttcagttattattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||| ||||  | ||| |||||||||    
T  3549781 ttcagttactattataagcaaaaatctacattttagattcattcaattaatgatatatacggtctttattataga 3549855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 34953907 - 34953965
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||  |||||| ||||||    
T  34953907 tattataagcaaaaatcaatattttaaattcattcattaaatgatgtatgtggtctata 34953965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 43738616 - 43738674
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||| ||||||||||||||| ||| || |||| ||||||||| ||||    
T  43738616 tattataagcaaaaattaacattttaaattcattcattagatgatatatgtgatttata 43738674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 3549910 - 3549850
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||| |  |||||| ||||||    
T  3549910 attattataagcaaaaattaacattttaaattcattcattaaataatgtatgtggtctata 3549850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 24981970 - 24981927
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||    
T  24981970 tattataagcaaaaatcaacattttagattcattcattaaatga 24981927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 22558996 - 22558942
Alignment:
Q  223 ttattattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgt 277  Q
    |||||||||||| ||||| || |||||||| ||||| | ||||||||||||||||    
T  22558996 ttattattataaacaaaattccacattttagattcatttaataaatgaaatatgt 22558942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 25391955 - 25391901
Alignment:
Q  236 caaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattata 290  Q
    |||||| | |||||||||||||| ||||||||||| |||| |||| |||||||||    
T  25391955 caaaaaaccacattttaaattcattcaataaatgatatatatgatatatattata 25391901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 322
Target Start/End: Complemental strand, 36164090 - 36163994
Alignment:
Q  225 attattataagcaaaaatcaacatttt--aaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattatttattcaataaatct 322  Q
    |||||||||||||||||| ||| ||||  ||||||| ||||||||||| ||||||| | ||   |||| | |||||| |||| ||||||| |||||||||    
T  36164090 attattataagcaaaaattaactttttttaaattcattcaataaatgatatatgtggtata---tatataaactacatacatcatttattgaataaatct 36163994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 39420443 - 39420413
Alignment:
Q  222 gttattattataagcaaaaatcaacatttta 252  Q
    |||||||||||||||||||||||||||||||    
T  39420443 gttattattataagcaaaaatcaacatttta 39420413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 50550248 - 50550190
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||  |||||||||||||||| ||||| ||| |||||||  |||||||||||||    
T  50550248 tattataaagaaaaatcaacattttagattcattcattaaatgatgtatgtgatctata 50550190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 6340701 - 6340648
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtg 278  Q
    |||||||||||||||||| ||| |||||  |||| ||||||||||| |||||||    
T  6340701 attattataagcaaaaattaactttttaggttcattcaataaatgatatatgtg 6340648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 29043463 - 29043508
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||||||| |||||  |||| |||||||||||    
T  29043463 attattataagcaaaaatcaactttttaggttcattcaataaatga 29043508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 33765915 - 33765858
Alignment:
Q  228 attataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||||||||||||||||||| ||||| | | |||||||  |||||| ||||||    
T  33765915 attataagcaaaaatcaacattttagattcatttattaaatgatgtatgtggtctata 33765858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 35544545 - 35544602
Alignment:
Q  228 attataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||| ||||||||||||||||||||||||| ||  |||||||  |||||| ||||||    
T  35544545 attatgagcaaaaatcaacattttaaattcattcgttaaatgatgtatgtggtctata 35544602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 8396999 - 8397059
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||| || ||||||| |||||||||| | | | ||||||| ||||||||||||||    
T  8396999 attattataaacagaaatcaatattttaaatttatttattaaatgatatatgtgatctata 8397059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 34184542 - 34184473
Alignment:
Q  248 ttttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattatttattcaataaa 319  Q
    |||||| |||| ||||||||| |  ||||||||| ||||||||||  ||||| |||||||||||| ||||||    
T  34184542 ttttaagttcattcaataaattatgtatgtgatccatattataga--ctacatacattatttattgaataaa 34184473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 31786002 - 31785939
Alignment:
Q  229 ttataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||||||||||||| ||||||||||| | ||||||| |  ||||||||||||||||||||    
T  31786002 ttataagcaaaaatcaaccttttaaattcatttaataaattatgtatgtgatctatattataga 31785939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 7505227 - 7505167
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||| ||||||||||||||||  ||||| ||| |||||||  |||||||||||||    
T  7505227 attattataaacaaaaatcaacattttggattcattcattaaatgatgtatgtgatctata 7505167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 11795867 - 11795807
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||||||||||||||| |||||  ||||| ||| ||||||| ||||||| ||||||    
T  11795867 attattataagcaaaaatcaatattttttattcattcattaaatgatatatgtggtctata 11795807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 3100416 - 3100459
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||    
T  3100416 tattataagcaaaaattaacattttagattcattcaataaatga 3100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 11795750 - 11795812
Alignment:
Q  230 tataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    ||||||||||||||||||||||| ||||| ||||| |||||  ||| || ||| |||||||||    
T  11795750 tataagcaaaaatcaacattttagattcattcaattaatgatgtatatggtctttattataga 11795812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 71270 - 71335
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    ||||||||||||||||| | |||||| ||||| ||||| |||||  ||| |||||| |||||||||    
T  71270 tattataagcaaaaatctatattttagattcattcaattaatgatgtatatgatctttattataga 71335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 13356268 - 13356223
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    ||||||||||||||||||| || |||||| |||| |||||||||||    
T  13356268 attattataagcaaaaatctactttttaagttcattcaataaatga 13356223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 15712252 - 15712187
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattata 290  Q
    |||| ||||||||||||||||| |||||||| || ||||| |||||  |||||| ||| |||||||    
T  15712252 attaatataagcaaaaatcaactttttaaatacattcaattaatgatgtatgtggtctttattata 15712187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 7079381 - 7079439
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||||||||||||||||||||||||||  || ||||||| ||||||| ||||||    
T  7079381 tattataagcaaaaatcaacattttaaattcatccattaaatgatatatgtggtctata 7079439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 44089557 - 44089490
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||||||  ||||| ||||||||||||||| |||||| ||||  |||||| |||||||||||||    
T  44089557 attattataagtcaaaattaacattttaaattcattcaatacatgatgtatgtggtctatattataga 44089490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 1961438 - 1961380
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||  |||||| ||||||    
T  1961438 tattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtctata 1961380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 38181769 - 38181827
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatcta 283  Q
    ||||||||||||||||||||| |||||| ||||| ||| |||||||  |||||||||||    
T  38181769 attattataagcaaaaatcaatattttagattcattcattaaatgatgtatgtgatcta 38181827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 32308388 - 32308323
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||||||||||| ||| || |||||||| | ||||||| |  ||||||||||||||||||||    
T  32308388 tattataagcaaaaattaaccttataaattcatttaataaattatgtatgtgatctatattataga 32308323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 32800718 - 32800783
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||||||||||||||| |||||| || | | ||||||| |  ||||||||||||||||||||    
T  32800718 tattataagcaaaaatcaaccttttaatttaatttaataaattatgtatgtgatctatattataga 32800783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 27331888 - 27331845
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||    
T  27331888 tattataagcaaaaatcaacattttagattcattcaattaatga 27331845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 31024182 - 31024225
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||    
T  31024182 tattataagcaaaaatcaacattttagattcattcattaaatga 31024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 31613457 - 31613410
Alignment:
Q  229 ttataagcaaaaatcaacattttaaattcagtcaataaatgaaatatg 276  Q
    |||||| |||||||||| |||||||||||| ||||||||||| |||||    
T  31613457 ttataaacaaaaatcaatattttaaattcaatcaataaatgatatatg 31613410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 34893827 - 34893796
Alignment:
Q  226 ttattataagcaaaaatcaacattttaaattc 257  Q
    ||||||||||||||||||||||||||||||||    
T  34893827 ttattataagcaaaaatcaacattttaaattc 34893796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 11726624 - 11726570
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatc 281  Q
    |||||||||||||||| ||||||||| ||||| ||| |||||||  |||||||||    
T  11726624 tattataagcaaaaattaacattttagattcattcattaaatgatgtatgtgatc 11726570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 15119788 - 15119846
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||| ||||||||| ||||| ||| |||||||  |||||| ||||||    
T  15119788 tattataagcaaaaattaacattttagattcattcattaaatgatgtatgtggtctata 15119846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 21183454 - 21183400
Alignment:
Q  229 ttataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatcta 283  Q
    |||||||||||||||||||||||| ||||| ||| |||||||  |||||| ||||    
T  21183454 ttataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtcta 21183400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 19268073 - 19268114
Alignment:
Q  229 ttataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||| |||||| |||| |||||||||||    
T  19268073 ttataagcaaaaatcaactttttaagttcattcaataaatga 19268114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 27328376 - 27328312
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||||  ||||||||||||||||||||| |||||| || |  |||||| |||||||||||||    
T  27328376 tattataagtcaaaatcaacattttaaattcattcaatacat-atgtatgtggtctatattataga 27328312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 36547352 - 36547417
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||| |||||||  |||||||||||||| | |||||||||  |||||||||| || ||||||    
T  36547352 tattataaacaaaaattgacattttaaattcatttaataaatgatgtatgtgatctttaatataga 36547417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 13295505 - 13295449
Alignment:
Q  236 caaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||  ||||||||| |||| ||||||||||| ||||||| | |||||||||||    
T  13295505 caaaaattcacattttaagttcattcaataaatgatatatgtggtatatattataga 13295449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 38708775 - 38708731
Alignment:
Q  244 aacattttaaattcagtcaataaatgaaatatgtgatctatatta 288  Q
    |||||||||| |||| ||||||||||| |||| ||||||||||||    
T  38708775 aacattttaagttcattcaataaatgacatatatgatctatatta 38708731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 89607 - 89667
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||||||||||| ||||  ||| |||||||  |||||||||||||    
T  89607 attattataagcaaaaatcaacattttagattctttcattaaatgatgtatgtgatctata 89667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 39533887 - 39533827
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||||||||||| ||| | ||| |||||||  |||||||||||||    
T  39533887 attattataagcaaaaatcaacattttagatttattcattaaatgatgtatgtgatctata 39533827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 8311368 - 8311325
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaat 268  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  8311368 attattataagcaaaaatcaactttttaaattcattcaataaat 8311325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 40952359 - 40952417
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||| ||||||||||||| ||||| ||| ||||||| ||||||| ||||||    
T  40952359 tattataagcaataatcaacattttagattcattcattaaatgatatatgtggtctata 40952417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 47181570 - 47181613
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    ||||||||||||||||| |||||||||||||| ||| |||||||    
T  47181570 tattataagcaaaaatctacattttaaattcattcattaaatga 47181613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 7740620 - 7740554
Alignment:
Q  226 ttattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    |||||||||||||||||  | |||||||||||| | ||| |||||  |||||||||| |||||||||    
T  7740620 ttattataagcaaaaatttatattttaaattcattaaattaatgatgtatgtgatctttattataga 7740554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 22493705 - 22493647
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||||||||| |||||||||| ||||| | | |||||||  |||||||||||||    
T  22493705 tattataagcaaaaaacaacattttatattcatttattaaatgatgtatgtgatctata 22493647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 2401049 - 2401094
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||| | ||| ||||||||||| |||||||||||    
T  2401049 attattataagcaaaagttaactttttaaattcattcaataaatga 2401094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 18488649 - 18488584
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    ||||||||||||||||| |||||||| ||||| ||  |||||||  |||||||||| || ||||||    
T  18488649 tattataagcaaaaatcgacattttagattcaatcgttaaatgatgtatgtgatctttaatataga 18488584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 19595567 - 19595506
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatatta 288  Q
    |||||||||||||| |  |||||||| ||||| ||||||||||| |||| |||| |||||||    
T  19595567 tattataagcaaaatttcacattttagattcattcaataaatgatatatatgatttatatta 19595506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 19596107 - 19596066
Alignment:
Q  247 attttaaattcagtcaataaatgaaatatgtgatctatatta 288  Q
    |||||||||||| ||||||||||| |||| ||||||||||||    
T  19596107 attttaaattcattcaataaatgatatatatgatctatatta 19596066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 27537065 - 27537130
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattata 290  Q
    ||||||||||||||||||  |||||||| ||||| ||| |||||||  || ||||||| |||||||    
T  27537065 attattataagcaaaaatttacattttagattcattcattaaatgatgtaagtgatctttattata 27537130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 29006964 - 29006907
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctat 284  Q
    |||||||||||||| || || ||||||||||| |||||||||||  |||||| |||||    
T  29006964 tattataagcaaaattccactttttaaattcattcaataaatgatgtatgtggtctat 29006907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 483988 - 484036
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaat 273  Q
    |||||||||| ||||||||||||||||| ||||| | ||| ||||||||    
T  483988 attattataaacaaaaatcaacattttagattcatttaatgaatgaaat 484036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 5924531 - 5924601
Alignment:
Q  248 ttttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattatttattcaataaat 320  Q
    ||||||||||| ||||||||| |  ||| | |||||||||| ||| |||||| ||||||||||||||||||||    
T  5924531 ttttaaattcattcaataaataatgtatctaatctatatta-aga-actacatacattatttattcaataaat 5924601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 16578638 - 16578582
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatcta 283  Q
    ||||||||| ||||||| ||||||||| |||| |||||||||||  |||| ||||||    
T  16578638 tattataagtaaaaatctacattttaagttcattcaataaatgatgtatgcgatcta 16578582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 25022527 - 25022587
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||| || |||| ||||||||| ||||| ||| |||||||  |||||||||||||    
T  25022527 attattataaacacaaattaacattttacattcattcattaaatgatgtatgtgatctata 25022587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 44171440 - 44171504
Alignment:
Q  222 gttattattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatat 286  Q
    ||||||||||||| ||||| | ||  ||||||||||| |||||||||||  ||||| ||||||||    
T  44171440 gttattattataaacaaaagttaattttttaaattcattcaataaatgatgtatgtaatctatat 44171504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 36988 - 36921
Alignment:
Q  222 gttattattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattat 289  Q
    ||||||||||||| ||||||||||||||||| ||||| ||| |||||||  ||| |||||||| ||||    
T  36988 gttattattataaacaaaaatcaacattttagattcattcattaaatgatgtatttgatctatgttat 36921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 39240 - 39195
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    ||||||||||||||||||||| |||||| ||||| ||| |||||||    
T  39240 attattataagcaaaaatcaaaattttagattcattcattaaatga 39195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 42769 - 42831
Alignment:
Q  222 gttattattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctat 284  Q
    ||||||||||||| ||||||||||| ||||| ||| | ||||||||||| |||| ||||||||    
T  42769 gttattattataatcaaaaatcaactttttagatttattcaataaatgatatatttgatctat 42831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 14995879 - 14995941
Alignment:
Q  230 tataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    ||||||||||||||||  ||||||||||| ||||||||||| ||||||| ||| |||| ||||    
T  14995879 tataagcaaaaatcaatgttttaaattcattcaataaatgatatatgtggtctttattgtaga 14995941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 2943223 - 2943279
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatcta 283  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||  |||||| ||||    
T  2943223 tattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtcta 2943279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 25245272 - 25245216
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatcta 283  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||  |||||| ||||    
T  25245272 tattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtcta 25245216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 23818435 - 23818478
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||    
T  23818435 tattataagcaaaaatcaacattttagattcattcattaaatga 23818478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 31814767 - 31814704
Alignment:
Q  222 gttattattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||| |||||||||||||| || |||||||||||| | | ||||||| |||| |||||||||    
T  31814767 gttatttttataagcaaaaataaatattttaaattcatttattaaatgatatatatgatctata 31814704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 21096194 - 21096256
Alignment:
Q  223 ttattattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||| || |||||| ||| | ||| ||||| | ||||||||||||||    
T  21096194 ttattattataagcaaaaattaatattttagatttattcattaaataatatatgtgatctata 21096256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 27330517 - 27330575
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||||||||| ||||| ||| ||||| | | || |||||||||    
T  27330517 tattataagcaaaaatcaacattttagattcattcattaaataataaatatgatctata 27330575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 10095730 - 10095787
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctat 284  Q
    |||||||||||||||| ||||||||| ||||| ||| |||||||  |||||| |||||    
T  10095730 tattataagcaaaaattaacattttagattcattcattaaatgatgtatgtggtctat 10095787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 12274820 - 12274885
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    ||||||||||||||||| ||||||||  |||| |||||||||||  ||||||  ||||| ||||||    
T  12274820 tattataagcaaaaatccacattttatgttcattcaataaatgatgtatgtggcctataatataga 12274885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 28229148 - 28229104
Alignment:
Q  226 ttattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||    
T  28229148 ttattataagccaaaattgacattttaaattcattcaataaatga 28229104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 10872683 - 10872741
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||  |||||||| ||||    
T  10872683 tattataagcaaaaatcaatattttaaattcattcattaaatgatgtatgtgatttata 10872741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 30519727 - 30519669
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||||||||| |||||||||| ||||| ||| |||||||  |||||||||||||    
T  30519727 tattataagcaaaaaccaacattttagattcattcattaaatgatgtatgtgatctata 30519669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 37897811 - 37897753
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||||||||||||||| ||| ||||| |  |||||| ||||||    
T  37897811 tattataagcaaaaatcaacattttaaattcattcattaaattatgtatgtggtctata 37897753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 40639924 - 40639866
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||||||||||||| | ||| |||||||  |||||| ||||||    
T  40639924 tattataagcaaaaatcaacattttaaatttattcattaaatgatgtatgtggtctata 40639866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 52216009 - 52215951
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||  |||||| ||||||    
T  52216009 tattataagcaaaaatcaacattttagattcactcattaaatgatgtatgtggtctata 52215951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 40639838 - 40639781
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctat 284  Q
    |||||||||||||||| ||||||||||||||| ||| |||||||  |||||| |||||    
T  40639838 tattataagcaaaaattaacattttaaattcattcattaaatgatgtatgtggtctat 40639781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 27601249 - 27601285
Alignment:
Q  222 gttattattataagcaaaaatcaacattttaaattca 258  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27601249 gttattattataaacaaaaatcaacattttaaattca 27601285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 8150061 - 8150010
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtg 278  Q
    |||||||| ||||||||||||||||||||| | |||||||| || |||||||    
T  8150061 tattataaacaaaaatcaacattttaaatttattcaataaacgatatatgtg 8150010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 29241611 - 29241548
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatatta 288  Q
    |||||||||||| ||||||||| ||||| ||||| |||||||||||  ||| || |||||||||    
T  29241611 attattataagccaaaatcaactttttagattcattcaataaatgatgtatttggtctatatta 29241548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 37897691 - 37897758
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattataga 292  Q
    ||||||||||||||||||| | |||||| ||||| ||||| |||||  ||| |||||| |||||||||    
T  37897691 attattataagcaaaaatctaaattttagattcattcaattaatgatgtatatgatctttattataga 37897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 54595801 - 54595844
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatga 270  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||    
T  54595801 tattataagcaaaaatcaacattttagattcattcattaaatga 54595844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 331927 - 331836
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattatttattcaataaat 320  Q
    |||||||||||||||| ||||||||| ||||| ||| |||||||  ||| | |||| ||||||  |||| ||| |||| ||||| |||||||||    
T  331927 tattataagcaaaaattaacattttagattcattcattaaatgatgtatataatctttattat--agaccacatacatcatttaatcaataaat 331836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 322
Target Start/End: Original strand, 334674 - 334769
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattatttattcaataaatct 322  Q
    ||||||||||||||||  | | |||||||||| | ||||||||||| |||| || ||||||  ||| |||||||| |||| ||| ||||||| |||||    
T  334674 attattataagcaaaaccccatattttaaattaattcaataaatgatatatatggtctata--ataaagactacatacatcattaattcaatgaatct 334769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 27224591 - 27224649
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    |||||||| ||||||||||||||||| ||| | ||| |||||||  |||||||||||||    
T  27224591 tattataaacaaaaatcaacattttagatttattcattaaatgatgtatgtgatctata 27224649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 322
Target Start/End: Original strand, 4980287 - 4980377
Alignment:
Q  230 tataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctatattatagagactacacacattatttattcaataaatct 322  Q
    |||||||||||||  | |||||| ||||| ||||||||||| ||||||  ||||||  ||| |||||||| |||| ||||||| ||| |||||    
T  4980287 tataagcaaaaattcatattttagattcattcaataaatgatatatgttgtctata--ataaagactacatacatcatttattgaatgaatct 4980377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 24075458 - 24075514
Alignment:
Q  227 tattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatcta 283  Q
    ||||||||||||||| |||||||||| ||||| ||| |||||||  |||||| ||||    
T  24075458 tattataagcaaaaaacaacattttagattcattcattaaatgatttatgtggtcta 24075514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 24270462 - 24270522
Alignment:
Q  225 attattataagcaaaaatcaacattttaaattcagtcaataaatgaaatatgtgatctata 285  Q
    ||||||||||||||||||||| |||||||||| | | | ||||||| |||| | |||||||    
T  24270462 attattataagcaaaaatcaatattttaaatttattgattaaatgatatatataatctata 24270522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University