View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9132_low_17 (Length: 242)
Name: NF9132_low_17
Description: NF9132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9132_low_17 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 5328 - 5538
Alignment:
| Q |
17 |
agttgacatcctcgaagacttgttaagaaagtgacattttgtcacacatgttcagactatttataaatccaatattcataaaaatcgcacaaaaaagatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5328 |
agttgacatcctcgaagacttgttaagaaagtgacattttgtcagacatgttcagactatttataaatccaatattcataaaaatcgcacaaaaaagatg |
5427 |
T |
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| Q |
117 |
acctataaagtgtaatatatagaatacataccatggttattatcagggacattaatgtcttctaagttctcactccaatgcatgtacgcaccttcatcac |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5428 |
acctataaagtgcaatatatagaatacataccatggttattatcagggacattaatgtcttctaagttctcactccaatccatgtacgcaccttcatcac |
5527 |
T |
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| Q |
217 |
ggctttcagac |
227 |
Q |
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||||||||||| |
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| T |
5528 |
ggctttcagac |
5538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 15456863 - 15456653
Alignment:
| Q |
17 |
agttgacatcctcgaagacttgttaagaaagtgacattttgtcacacatgttcagactatttataaatccaatattcataaaaatcgcacaaaaaagatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15456863 |
agttgacatcctcgaagacttgttaagaaagtgacattttgtcagacatgttcagactatttataaatccaatattcataaaaatcgcacaaaaaagatg |
15456764 |
T |
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| Q |
117 |
acctataaagtgtaatatatagaatacataccatggttattatcagggacattaatgtcttctaagttctcactccaatgcatgtacgcaccttcatcac |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15456763 |
acctataaagtgcaatatatagaatacataccatggttattatcagggacattaatgtcttctaagttctcactccaatccatgtacgcaccttcatcac |
15456664 |
T |
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| Q |
217 |
ggctttcagac |
227 |
Q |
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||||||||||| |
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| T |
15456663 |
ggctttcagac |
15456653 |
T |
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