View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9132_low_19 (Length: 214)

Name: NF9132_low_19
Description: NF9132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9132_low_19
NF9132_low_19
[»] chr5 (5 HSPs)
chr5 (129-199)||(12397798-12397868)
chr5 (129-199)||(12380272-12380342)
chr5 (129-199)||(12400995-12401063)
chr5 (134-191)||(12377833-12377890)
chr5 (19-61)||(12397666-12397708)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 12397798 - 12397868
Alignment:
Q  129 tgcatagaaagtaagaggcctaaccagtaatacaaatcaaaaggaccaacaaaaatatcaaggaagagcac 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12397798 tgcatagaaagtaagaggcctaaccagtaatacaaatcaaaaggaccaacaaaaatatcaaggcagagcac 12397868  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 12380272 - 12380342
Alignment:
Q  129 tgcatagaaagtaagaggcctaaccagtaatacaaatcaaaaggaccaacaaaaatatcaaggaagagcac 199  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12380272 tgcataaaaagtaagagccctaaccagtaatacaaatcaaaaggaccaacaaaaatatcaaggcagagcac 12380342  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 12400995 - 12401063
Alignment:
Q  129 tgcatagaaagtaagaggcctaaccagtaatacaaatcaaaaggaccaacaaaaatatcaaggaagagcac 199  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||  ||| |||||||    
T  12400995 tgcatagaaagtaagaggcctaaccagta--acaaatcaagaggaccaacaaaaatattgaggcagagcac 12401063  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 12377833 - 12377890
Alignment:
Q  134 agaaagtaagaggcctaaccagtaatacaaatcaaaaggaccaacaaaaatatcaagg 191  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||    
T  12377833 agaaagtaagaggcctaaccagttatacaaatgaaaaggagcaacaaaaatattaagg 12377890  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 12397666 - 12397708
Alignment:
Q  19 gcgagggcattcgaagggtcctcttgcttcaactggttttcct 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  12397666 gcgagggcattcaaagggtcctcttgcttcaactggttttcct 12397708  T

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