View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9132_low_3 (Length: 773)
Name: NF9132_low_3
Description: NF9132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9132_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 17 - 761
Target Start/End: Original strand, 5458029 - 5458773
Alignment:
| Q |
17 |
tcacggtcaaggtgcacgaccataatttaaataaaaacgttaaatgttacggaacattgtcatcccaaaactgataagtgttttgattttgaaactcaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
5458029 |
tcacggtcaaggtgcacgaccataatttaaataaaaacgttaaatgttacgaaacattgtcatcccaaaactgataagtgttttgatttttaaactcgca |
5458128 |
T |
|
| Q |
117 |
tcgtgtgtgtgaatagaaatgctttgttaccacaaattattgaaaagaaa-gagagaaaaatatactttggtggtcaatgatgcaagttacttatgtttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5458129 |
tcgtgtgtgtgaatagaaatgctttgttaccacaaattattgaaaagaaaagaaagaaaaatatactttggtggtcaatgatgca-gttacttatgtttg |
5458227 |
T |
|
| Q |
216 |
tgtttgagtgcagtcacacttggtttggaaaatttggcaactttctcgctagctgtgaactcggtgccatatttcatgggaatcatgcattatcaactag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5458228 |
tgtttgagtgcagtcacacttggtttggaaaatttggcaactttctcgctagctgtgaactcggtgccatatttcatgggaatcatgcattatcaactag |
5458327 |
T |
|
| Q |
316 |
aagatgctgctaacatgctcaccaactatatgggtgtcagttacattctctctattttggtggctatcgttgctgatacatggattggtagatacaaatc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5458328 |
aagatgctgctaacatgctcaccaactatatgggtgtcagttacattctctctattttggtggctatcgttgctgatacatggattggtagatacaaatc |
5458427 |
T |
|
| Q |
416 |
tgttttattttctggcttcttcgagtttttggtaagatacaaaaatcctctctcaatacctctttaacattttgtgtaagtagttgttaacttagcacta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5458428 |
tgttttattttctggcttcttcgagtttttggtaagatacaaaaatcctctctcaatacctctttaacattttgtgtaagtagttgttaacttagcacta |
5458527 |
T |
|
| Q |
516 |
atctaaacccaaaaatgtgaaatgcaatggaaattgaagttcctttcaaatttgatgttataaatggactaaaattgcaatgaagccaaatgctaggata |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5458528 |
atctaaacccaaaaatgtgaaatgcaatggaaattgaagttcctttcaaatttgatgttataaatggactaaaattgcaatgaagccaaatgctaggata |
5458627 |
T |
|
| Q |
616 |
ggtttattgaataggtattcataaggttatgtttttgtgattgttattgcagggtcttgcattgcttacagtacaagcacactatcctagtcttaagcca |
715 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5458628 |
ggtttattgaatagttattcataaggttatgtttttgtgattgttattgcagggtcttgcattgcttacagtacaagcacactatcctagtcttaagcca |
5458727 |
T |
|
| Q |
716 |
aaagagtgcaatgtcaatgacataacagttcattgtaaaacaccaa |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5458728 |
aaagagtgcaatgtcaatgacataacagttcattgtaaaacaccaa |
5458773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 298 - 451
Target Start/End: Original strand, 36322588 - 36322741
Alignment:
| Q |
298 |
tcatgcattatcaactagaagatgctgctaacatgctcaccaactatatgggtgtcagttacattctctctattttggtggctatcgttgctgatacatg |
397 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| | ||||||| ||||| || ||||||| ||||| ||| | || || | ||||||||||||| |
|
|
| T |
36322588 |
tcatgcattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgtcgtagccgtttttgctgatacatg |
36322687 |
T |
|
| Q |
398 |
gattggtagatacaaatctgttttattttctggcttcttcgagtttttggtaag |
451 |
Q |
| |
|
|||||| ||| ||||||| ||| | ||||||||| ||| |||||||||||||| |
|
|
| T |
36322688 |
gattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaag |
36322741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University