View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9132_low_4 (Length: 567)
Name: NF9132_low_4
Description: NF9132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9132_low_4 |
 | |
|
| [»] scaffold0242 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 198 - 554
Target Start/End: Original strand, 29894276 - 29894616
Alignment:
| Q |
198 |
aaaaacctctcacaagtgattatgttgtgacggtagt-tagcttattttggnnnnnnnnctctcgcaagtttgttatctcacctatatgaagnnnnnnng |
296 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||| | |
|
|
| T |
29894276 |
aaaaaactctcacgagtgattctgttgtgaccgtagtatagcttattttggaaaaaa--ctctcgcaagtt-gttatctcacctatatgaagtaaaaaag |
29894372 |
T |
|
| Q |
297 |
tgtttaattgaaaagtaggtcaagagctcagttcagaacaccgtgactgcaacgatgacaaggagacg--gtgaagggttggatttttctcattagattt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
29894373 |
tgtttaattgaaaagtaggtcaagagctccgttcagaacacagtgactgcaaggatgacaaggagacgtggtaaagggttggatttttctcat------- |
29894465 |
T |
|
| Q |
395 |
aggtttcatcctcaacgccgacacccgactgcatctatcatgactccgacaacgctggtggttctccccgatgatctcatcgtcaagatactttccttcc |
494 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||| |||||||||||||||| | |
|
|
| T |
29894466 |
---------cctcgacgccaacacccgactgcatctatcatgattccgacaaagctggtggttctccctgacgatctcatcttcaagatactttccttac |
29894556 |
T |
|
| Q |
495 |
ttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataatct |
554 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
29894557 |
ttccggttatatctcttgttcgattcacttgtgttagcaagtcttggaaaaccctaatct |
29894616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29887439 - 29887489
Alignment:
| Q |
1 |
gctgctgaattatttccttgtcctcccaagttgcattgtcaactggtctat |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29887439 |
gctgctgaattatttccttgtcctcccaagttgcattgtcaactggtctat |
29887489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29901807 - 29901857
Alignment:
| Q |
1 |
gctgctgaattatttccttgtcctcccaagttgcattgtcaactggtctat |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29901807 |
gctgctgaattatttccttgtcctcccaagttgcattgtcaactggtctat |
29901857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 391 - 557
Target Start/End: Complemental strand, 29477404 - 29477233
Alignment:
| Q |
391 |
atttaggtttcatcctcaacgccgacacccgactgcatct-----atcatgactccgacaacgctggtggttctccccgatgatctcatcgtcaagatac |
485 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||| | | |||||||||||| |||| |||||| || || || |||||||||| || ||| |
|
|
| T |
29477404 |
attttggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtggtccttcctgacgatctcatcgcagagttac |
29477305 |
T |
|
| Q |
486 |
tttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataatctctg |
557 |
Q |
| |
|
||||||||||||| || | ||||||||||||| ||| ||||||| ||||||||||||| || ||||||||| |
|
|
| T |
29477304 |
tttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccctaatctctg |
29477233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 546
Target Start/End: Original strand, 29105894 - 29105989
Alignment:
| Q |
451 |
ggtggttctccccgatgatctcatcgtcaagatactttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaac |
546 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||||||||| ||||||| |||| ||||||| || | ||| | ||||||||||||||| |
|
|
| T |
29105894 |
ggtggttctccccgatgatctcatcgcagaagttctttccttccttcccgttatatttcttcttcgatttaggtctgtcagcaagtcttggaaaac |
29105989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 547
Target Start/End: Complemental strand, 29446615 - 29446532
Alignment:
| Q |
464 |
gatgatctcatcgtcaagatactttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaacc |
547 |
Q |
| |
|
||||||||||||| | || | ||||||||||||| || | ||||||||||||||||| ||||| || |||| |||||||||| |
|
|
| T |
29446615 |
gatgatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacc |
29446532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 391 - 557
Target Start/End: Complemental strand, 14755 - 14584
Alignment:
| Q |
391 |
atttaggtttcatcctcaacgccgacacccgactgcatct-----atcatgactccgacaacgctggtggttctccccgatgatctcatcgtcaagatac |
485 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| | | |||||||||||| |||| |||| | || || | |||||||||| || ||| |
|
|
| T |
14755 |
atttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtgttccttccgggcgatctcatcgcagagttac |
14656 |
T |
|
| Q |
486 |
tttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataatctctg |
557 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||| |||||||||||| ||||||||||| |||| |||| |
|
|
| T |
14655 |
tttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctg |
14584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 391 - 557
Target Start/End: Complemental strand, 23590 - 23419
Alignment:
| Q |
391 |
atttaggtttcatcctcaacgccgacacccgactgcatct-----atcatgactccgacaacgctggtggttctccccgatgatctcatcgtcaagatac |
485 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| | | |||||||||||| |||| |||| | || || | |||||||||| || ||| |
|
|
| T |
23590 |
atttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtgttccttccgggcgatctcatcgcagagttac |
23491 |
T |
|
| Q |
486 |
tttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataatctctg |
557 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||| |||||||||||| ||||||||||| |||| |||| |
|
|
| T |
23490 |
tttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctg |
23419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 4015861 - 4015767
Alignment:
| Q |
458 |
ctccccgatgatctcatcgtcaagatactttccttccttccggttatatctcttgttcgattcagttgtgttaacaagtcttggaaaaccataat |
552 |
Q |
| |
|
|||||||| || |||||| | || ||||||| || ||||| || | |||||||||||||||||| ||||| | ||||||||||||||| |||| |
|
|
| T |
4015861 |
ctccccgacgaactcatctttgaggtactttcatttcttccagtgagatctcttgttcgattcaggtgtgtgagtaagtcttggaaaaccctaat |
4015767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University