View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9132_low_6 (Length: 565)

Name: NF9132_low_6
Description: NF9132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9132_low_6
NF9132_low_6
[»] chr6 (4 HSPs)
chr6 (237-561)||(18699656-18699980)
chr6 (19-180)||(18700005-18700166)
chr6 (130-227)||(8891056-8891153)
chr6 (23-57)||(8890926-8890960)
[»] chr4 (3 HSPs)
chr4 (307-547)||(51033931-51034171)
chr4 (109-177)||(51035187-51035255)
chr4 (20-68)||(51035309-51035357)
[»] scaffold0164 (2 HSPs)
scaffold0164 (19-312)||(12063-12357)
scaffold0164 (296-432)||(1910-2046)
[»] chr3 (3 HSPs)
chr3 (19-224)||(48118064-48118275)
chr3 (342-405)||(1138730-1138793)
chr3 (426-454)||(1138715-1138743)
[»] chr5 (2 HSPs)
chr5 (128-227)||(40883368-40883467)
chr5 (26-58)||(40883560-40883592)
[»] chr1 (2 HSPs)
chr1 (19-85)||(33358470-33358536)
chr1 (128-184)||(33358293-33358349)
[»] chr7 (2 HSPs)
chr7 (114-184)||(10208622-10208692)
chr7 (50-114)||(10208721-10208787)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 237 - 561
Target Start/End: Complemental strand, 18699980 - 18699656
Alignment:
Q  237 cttctcaactgtctttgttgttgttctatcnnnnnnnnnctgtaacactttattgtttttctctaaagctatggttatgggtgcagagagtcaacaaaga 336  Q
    |||||||||| |||||||||||||||||||          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18699980 cttctcaactatctttgttgttgttctatctttttttttttgttacactttattgtttttctctaaagctatggttatgggtgcagagagtcaacaaaga 18699881  T
Q  337 aatataacatgaaggggagattgaaaatgtagatctctagaaggaagcacttcataacttccagaaccattccctcaagaaagaagataaacttccagaa 436  Q
     |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18699880 tatataacatgaaggggagtttgaaattgtagatctctagaaggaagcacttcataacttccagaaccattccctcaagaaagaaaataaacttccagaa 18699781  T
Q  437 ccaagtttacttcttcgataattaagttatgtttttcatgaatttgtttttcttctgattggtcgtttgcaaaattctattttctattgaattggaagag 536  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18699780 ccaaatttacttcttcgataattaagttctatttttcatgaatttgtttttcttctgattggtcgtttgcaatattctattttctattgaattggaagag 18699681  T
Q  537 ggaaagcaagacagaataatctacc 561  Q
    ||||||||||| ||||||| |||||    
T  18699680 ggaaagcaagaaagaataaactacc 18699656  T

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Target: chr6; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 18700166 - 18700005
Alignment:
Q  19 gatgttgtttgtaattgttgtgatgttattcaggttgagcgagcaaagacggttcactaatgttcccatgactcaatttctcaataaattcaaagagagt 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18700166 gatgttgtttgtaattgttgtgatgttattcaggttgagcaagcaaagacggttcactaatgttcccatgactcaatttctcaataaattcaaagagagt 18700067  T
Q  119 gcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttttct 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18700066 gcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttttct 18700005  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 8891056 - 8891153
Alignment:
Q  130 gtacgtgtttctaattccactctttatgatcatcatttgtttcatttttctttttgagtgaataataatttctttcatgtttctcacaatattccatg 227  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |  ||||||||||||||||||||||| |||||||    
T  8891056 gtacgtgtttctaattccactctttatgatcatcatttgtttaatttttatttttgagggaatcaccatttctttcatgtttctcacaatgttccatg 8891153  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 8890926 - 8890960
Alignment:
Q  23 ttgtttgtaattgttgtgatgttattcaggttgag 57  Q
    |||||||||||||||||||||||||||||| ||||    
T  8890926 ttgtttgtaattgttgtgatgttattcaggatgag 8890960  T

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Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 307 - 547
Target Start/End: Complemental strand, 51034171 - 51033931
Alignment:
Q  307 atggttatgggtgcagagagtcaacaaagaaatataacatgaaggggagattgaaaatgtagatctctagaaggaagcacttcataacttccagaaccat 406  Q
    |||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| |    
T  51034171 atgggtatggctgcacagagtcaacaaagaaatagaacatgaaggggagattgaaattgttaatctctagaaggaagcacttcataacttccagaacctt 51034072  T
Q  407 tccctcaagaaagaagataaacttccagaaccaagtttacttcttcgataattaagttatgtttttcatgaatttgtttttcttctgattggtcgtttgc 506  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| ||||||    
T  51034071 tccctcaagaaagaaaataaacttccagaaccaagtttacttcttcgatgattaacttctgtttttcatgaatttgtttttcttctgattggttgtttgc 51033972  T
Q  507 aaaattctattttctattgaattggaagagggaaagcaaga 547  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  51033971 aaaattctattttctattgaataggaagagggaaagcaaga 51033931  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 51035255 - 51035187
Alignment:
Q  109 caaagagagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttt 177  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51035255 caaagaaagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttt 51035187  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 51035357 - 51035309
Alignment:
Q  20 atgttgtttgtaattgttgtgatgttattcaggttgagcgagcaaagac 68  Q
    ||||| |||||| ||||||| |||||||||| |||||||||||||||||    
T  51035357 atgttatttgtatttgttgttatgttattcaagttgagcgagcaaagac 51035309  T

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Target: scaffold0164 (Bit Score: 182; Significance: 4e-98; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 12357 - 12063
Alignment:
Q  19 gatgttgtttgtaattgttgtgatgttattcaggttgagcgagcaaagacggttcactaatgttcccatgactcaatttctcaataaattcaaagagagt 118  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12357 gatgtttttcgtaattgttgtgatgttattcaggttgagcgagcaaagacaattcactaatgttcccatgactcaatttctcaataaattcaaagagagt 12258  T
Q  119 gcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttg-tttcatttttctttttgagtgaataataatttctttcatgtttctcaca 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  12257 gcatgtaggatgtaagtgtttctaattccactctttatgatcatcatttgttttcatttttcattttgagtgaataataatttctttcatgtttttcaca 12158  T
Q  218 atattccatg-nnnnnnnnncttctcaactgtctttgttgttgttctatcnnnnnnnnnctgtaacactttattgtttttctctaaagctatggtt 312  Q
    ||||||||||          |||| |||||||||||||||||||||||||          ||| ||||||||||||||||||||||||||||||||    
T  12157 atattccatgatttttttttcttcccaactgtctttgttgttgttctatcttttttttt-tgttacactttattgtttttctctaaagctatggtt 12063  T

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Target: scaffold0164; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 2046 - 1910
Alignment:
Q  296 tctctaaagctatggttatgggtgcagagagtcaacaaagaaatataacatgaaggggagattgaaaatgtagatctctagaaggaagcacttcataact 395  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  2046 tctctaaagctatggttatggctgcagagagtcaacaaagaaatataacatgaaggggagattgaaattgtagatatctagaaggaagcacttaataact 1947  T
Q  396 tccagaaccattccctcaagaaagaagataaacttcc 432  Q
    || |||||| |||||||||||||||| ||||||||||    
T  1946 tcgagaacctttccctcaagaaagaaaataaacttcc 1910  T

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Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 48118064 - 48118275
Alignment:
Q  19 gatgttgtttgtaattgttgtgatgttattcaggttgagcgagcaaagacggttcactaatgttcccatg--actcaatttctcaataaattcaaagaga 116  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||| |||| |    
T  48118064 gatgttgtttgtaattgttgcgatgttactcaggttgagcgagcaaagacggttcactaatgttcccgtggctctcaatttctcaataaattctaagaca 48118163  T
Q  117 gtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttc------atttttctttttgagtgaataataatttctttcatgtt 210  Q
     || |   |  | |||||||||||||||||||||| ||| ||||||||||||||||      |||||| ||||||||  ||| || || |||||||||||    
T  48118164 -tg-actcaataagtacgtgtttctaattccactcattacgatcatcatttgtttcatttttatttttatttttgaggtaatcatcatgtctttcatgtt 48118261  T
Q  211 tctcacaatattcc 224  Q
    ||||||||||||||    
T  48118262 tctcacaatattcc 48118275  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 1138793 - 1138730
Alignment:
Q  342 aacatgaaggggagattgaaaatgtagatctctagaaggaagcacttcataacttccagaacca 405  Q
    ||||||| |||| |||||||| ||| ||||||| || |||| ||||||| ||||||||||||||    
T  1138793 aacatgatggggtgattgaaattgtggatctcttgatggaaacacttcagaacttccagaacca 1138730  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 454
Target Start/End: Complemental strand, 1138743 - 1138715
Alignment:
Q  426 aacttccagaaccaagtttacttcttcga 454  Q
    |||||||||||||||||||||||||||||    
T  1138743 aacttccagaaccaagtttacttcttcga 1138715  T

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Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 40883467 - 40883368
Alignment:
Q  128 atgtacgtgtttctaattccactctttatgatcatcatttgtttcatttttctttttgagtgaataataatttctttcatgtttctcacaatattccatg 227  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||  |||| |  ||||||||||||||||||||||| |||||||    
T  40883467 atgtacgtgtttctaattccactctttatgatcatcatttgtttaatttttatttttgatggaatcaccatttctttcatgtttctcacaatgttccatg 40883368  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 40883592 - 40883560
Alignment:
Q  26 tttgtaattgttgtgatgttattcaggttgagc 58  Q
    ||||||||||||||||| |||||||||||||||    
T  40883592 tttgtaattgttgtgattttattcaggttgagc 40883560  T

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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 33358536 - 33358470
Alignment:
Q  19 gatgttgtttgtaattgttgtgatgttattcaggttgagcgagcaaagacggttcactaatgttccc 85  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33358536 gatgttgtttgtaattgttgtgatgttactcaggttgagcgagcaaagacggttcactaatgttccc 33358470  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 33358349 - 33358293
Alignment:
Q  128 atgtacgtgtttctaattccactctttatgatcatcatttgtttcatttttcttttt 184  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  33358349 atgtatgtgtttctaattccactctttacgatcatcatttgtttcatttttattttt 33358293  T

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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 10208692 - 10208622
Alignment:
Q  114 agagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttttcttttt 184  Q
    ||||||||||||  |||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  10208692 agagtgcatgtataatgtacgtgtttctaattccactcattacgatcatcatttgtttcatttttattttt 10208622  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 10208787 - 10208721
Alignment:
Q  50 aggttgagcgagcaaagacggttcactaatgttcccatg--actcaatttctcaataaattcaaaga 114  Q
    |||||||||||||||| |||||||| |||||||||| ||   |||||||||||||||||||||||||    
T  10208787 aggttgagcgagcaaaaacggttcattaatgttcccgtggctctcaatttctcaataaattcaaaga 10208721  T

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