View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9133_high_15 (Length: 370)

Name: NF9133_high_15
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9133_high_15
NF9133_high_15
[»] chr2 (4 HSPs)
chr2 (20-351)||(43867369-43867700)
chr2 (80-352)||(43863876-43864149)
chr2 (39-342)||(43875059-43875357)
chr2 (87-190)||(38989109-38989212)
[»] chr4 (3 HSPs)
chr4 (45-201)||(52186780-52186936)
chr4 (78-157)||(15527301-15527380)
chr4 (117-157)||(35968336-35968376)
[»] scaffold0438 (1 HSPs)
scaffold0438 (87-193)||(5312-5418)
[»] chr3 (11 HSPs)
chr3 (104-214)||(480963-481073)
chr3 (63-214)||(476010-476161)
chr3 (107-201)||(778176-778270)
chr3 (87-196)||(1304691-1304800)
chr3 (104-196)||(1186243-1186335)
chr3 (104-196)||(1204307-1204399)
chr3 (131-194)||(5361014-5361077)
chr3 (66-144)||(2996512-2996590)
chr3 (108-172)||(4149603-4149667)
chr3 (108-172)||(4165375-4165439)
chr3 (129-201)||(7125963-7126035)
[»] chr5 (3 HSPs)
chr5 (108-193)||(33958061-33958146)
chr5 (86-171)||(19658349-19658434)
chr5 (86-171)||(19675188-19675273)
[»] chr7 (2 HSPs)
chr7 (104-180)||(32413636-32413712)
chr7 (128-201)||(6889182-6889255)
[»] chr6 (5 HSPs)
chr6 (107-180)||(7115536-7115609)
chr6 (107-180)||(7120608-7120681)
chr6 (107-180)||(7124012-7124085)
chr6 (128-180)||(7140726-7140778)
chr6 (128-180)||(8680340-8680392)
[»] scaffold0896 (1 HSPs)
scaffold0896 (107-180)||(2255-2328)
[»] chr1 (1 HSPs)
chr1 (126-158)||(42602903-42602935)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 43867700 - 43867369
Alignment:
Q  20 agcctacgtagcaggaaacataagcacaacgaaaacgaagacattatcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  43867700 agcctacgtagcaggaaacataagcacaacgaaaacgaagacattatcagtaacttgactgattgtattctcattcacgtactgtcctttttgaacgcaa 43867601  T
Q  120 aagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttcgaactttaagaccgagaa 219  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43867600 aagaggccgctcaaacttgcattttgtccaaaagatggatcactctctggaagggtcttcctactattacattaagttcttcgaactttaggaccgagaa 43867501  T
Q  220 aagtttagccgaattcctgtctcactttttatctcttcgcgatggctcaactactatacacactctcgatgtttactgcccatattgcttggagccaagc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| |||    
T  43867500 aagtttagccgaattcctgtctcactttttatctcttcgcgatggctcaaccactatacacactctcgatgttcactgcctatattacttggagcctagc 43867401  T
Q  320 ctattctaactgattataaaatacactatttc 351  Q
    || ||| || |||||||||||||| |||||||    
T  43867400 ctgttccaaatgattataaaatacgctatttc 43867369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 80 - 352
Target Start/End: Complemental strand, 43864149 - 43863876
Alignment:
Q  80 gattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttc 179  Q
    |||||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  43864149 gattgtattctcattcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttc 43864050  T
Q  180 ctacta-ttacattaagttcttcgaactttaagaccgagaaaagtttagccgaattcctgtctcactttttatctcttcgcgatggctcaactactatac 278  Q
    |||||| |||||||||||||||| ||||||| |||| || ||||||||  |||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  43864049 ctactaattacattaagttcttcaaactttaggaccaaggaaagtttaagcgaatttctgtctcaatttttatctcttcgcgatggctcaaccactatac 43863950  T
Q  279 acactctcgatgtttactgcccatattgcttggagccaagcctattctaactgattataaaatacactatttca 352  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||  |||||||    
T  43863949 acactctcgatgtttactgcccatattccttggagccaagcctattcaaaatgattataaaatacgttatttca 43863876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 39 - 342
Target Start/End: Complemental strand, 43875357 - 43875059
Alignment:
Q  39 ataagcacaacgaaaacgaagacattatcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttg 138  Q
    ||||| ||||| |||| |||||||||||||||||||| |  |||||||||||||||||| || |||||||||| || |||||||||| ||||||||||||    
T  43875357 ataaggacaacaaaaatgaagacattatcagtaacttgatcgattgtattctcattcacatagtgtcctttttaaatgcaaaagaggtcgttcaaacttg 43875258  T
Q  139 cattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttcgaactttaagaccgagaaaagtttagccgaattcctg 238  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||| |||||||| |||| |   |||||| |||| || ||| |||    | |||||||    
T  43875257 cattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttcat---actttaggaccaaggaaactttcagtgtattcctg 43875161  T
Q  239 tctcactttttatctcttcgcgatggctcaactactatacacactctcgatgtttactgcccatattgcttggagccaagcctattctaactgattataa 338  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||  ||||||||| |||||| ||||| | | ||||||||  ||||| || | |||||||    
T  43875160 tctcaatttttatctctttgcgatggctcaaccactatacaca--ctcgatgttgactgccgatattacattgagccaagtatattccaaattattataa 43875063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 38989109 - 38989212
Alignment:
Q  87 ttctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactat 186  Q
    ||||| ||||| || |||||||| | ||||||| | |||| |||||||| ||| ||||||||||||||||||||| |||||||||| ||||| | |||||    
T  38989109 ttctccttcacatactgtcctttctaaacgcaatacaggctgttcaaacatgcgttttgtccaaaagatggatcattctctggaagagtctttccactat 38989208  T
Q  187 taca 190  Q
    ||||    
T  38989209 taca 38989212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 52186780 - 52186936
Alignment:
Q  45 acaacgaaaacgaagacattatcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcatttt 144  Q
    ||||| |||| ||||||||||||||| |||| ||||||| | ||||| | ||| || | |||||| ||||||||||| ||||||||||||| ||||||||    
T  52186780 acaacaaaaatgaagacattatcagtgacttgactgattctgttctcctccacctactctcctttctgaacgcaaaacaggccgttcaaacctgcatttt 52186879  T
Q  145 gtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttc 201  Q
    ||||||||||||||||| |||||||| | ||||||| ||| ||||| ||||||||||    
T  52186880 gtccaaaagatggatcattctctggaggagtcttcccactcttacactaagttcttc 52186936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 15527380 - 15527301
Alignment:
Q  78 ctgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatgg 157  Q
    ||||||| ||| |||||||| | ||||| ||||||| | | ||||| || |||| |||||||||| ||||||||||||||    
T  15527380 ctgattgcattatcattcacattttgtcatttttgagcactaaagacgctgttcgaacttgcattctgtccaaaagatgg 15527301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 35968336 - 35968376
Alignment:
Q  117 caaaagaggccgttcaaacttgcattttgtccaaaagatgg 157  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  35968336 caaaacaggtcgttcaaacttgcgttttgtccaaaagatgg 35968376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 5312 - 5418
Alignment:
Q  87 ttctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactat 186  Q
    ||||||||||| || |||||||||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||  |||||| ||| |    
T  5312 ttctcattcacatactgtcctttttgaacacaagagaggccgttcaaacatgcattttatccaaaagatggatcaatctctggaagactcttcccactct 5411  T
Q  187 tacatta 193  Q
    |||||||    
T  5412 tacatta 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 480963 - 481073
Alignment:
Q  104 tcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttcga 203  Q
    |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||  |||||| ||  |||| ||||||||||| |    
T  480963 tcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacgcttaccttaagttcttcaa 481062  T
Q  204 actttaagacc 214  Q
    |||||| ||||    
T  481063 actttaggacc 481073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 476010 - 476161
Alignment:
Q  63 ttatcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaa 162  Q
    |||||||| | ||| | |||||||||||| |||||  | | |||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||    
T  476010 ttatcagtgatttatcagattgtattctccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaagatggatcaa 476109  T
Q  163 tctctggaagggtcttcctactattacattaagttcttcgaactttaagacc 214  Q
    |||||||||   |||||| ||  ||||| |||||||||| ||||||| ||||    
T  476110 tctctggaatactcttcccacccttacactaagttcttcaaactttaggacc 476161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 778270 - 778176
Alignment:
Q  107 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttc 201  Q
    |||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||   ||| || ||| ||||||||||||||||    
T  778270 tttttgaaagccaaagaggcagtccaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttc 778176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 1304800 - 1304691
Alignment:
Q  87 ttctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactat 186  Q
    |||||| |||| || | ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||||||||||  |||| | ||| |    
T  1304800 ttctcaatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactct 1304701  T
Q  187 tacattaagt 196  Q
    ||||||||||    
T  1304700 tacattaagt 1304691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 1186243 - 1186335
Alignment:
Q  104 tcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagt 196  Q
    ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||||||||||  |||| | ||| |||||||||||    
T  1186243 tcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacattaagt 1186335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 1204307 - 1204399
Alignment:
Q  104 tcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagt 196  Q
    ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||||||||||  |||| | ||| |||||||||||    
T  1204307 tcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacattaagt 1204399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 5361077 - 5361014
Alignment:
Q  131 caaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaa 194  Q
    |||||||||||||| ||||||||||||| |||||||||||||  |||||| ||| || ||||||    
T  5361077 caaacttgcattttatccaaaagatggaccaatctctggaagactcttccaactcttgcattaa 5361014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 2996590 - 2996512
Alignment:
Q  66 tcagtaacttaactgattgtattctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcatttt 144  Q
    ||||| |||||||||||||| || || ||||| || | || ||||||||| ||||||| || |||||||||||||||||    
T  2996590 tcagtgacttaactgattgtgttatccttcacatactttcatttttgaacacaaaagatgcagttcaaacttgcatttt 2996512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 4149603 - 4149667
Alignment:
Q  108 ttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaag 172  Q
    |||||||| | ||||||||||||||||| ||| |||||||||  |||||||  ||||||||||||    
T  4149603 ttttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctggaag 4149667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 4165375 - 4165439
Alignment:
Q  108 ttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaag 172  Q
    |||||||| | ||||||||||||||||| ||| |||||||||  |||||||  ||||||||||||    
T  4165375 ttttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctggaag 4165439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 7125963 - 7126035
Alignment:
Q  129 ttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttc 201  Q
    |||||||||| || ||||||||||||||||  |||||||||||  ||||||| ||  ||||||||| ||||||    
T  7125963 ttcaaacttgtatcttgtccaaaagatggaagaatctctggaaacgtcttccaacccttacattaatttcttc 7126035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 33958146 - 33958061
Alignment:
Q  108 ttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacatta 193  Q
    |||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||  ||| ||||||||    
T  33958146 ttttgaacaccagagaggccgttcaaacttgcattttatccaaaagatggatcaatctctggaagactcttcacactcttacatta 33958061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 19658434 - 19658349
Alignment:
Q  86 attctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaa 171  Q
    |||||| ||||| | ||||| |||||| |||||||| | ||||||||||||||  |||||||||  |||||||  |||||||||||    
T  19658434 attctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa 19658349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 19675273 - 19675188
Alignment:
Q  86 attctcattcacgtattgtcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaa 171  Q
    |||||| ||||| | ||||| |||||| |||||||| | ||||||||||||||  |||||||||  |||||||  |||||||||||    
T  19675273 attctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa 19675188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 32413636 - 32413712
Alignment:
Q  104 tcctttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 180  Q
    |||| ||||||| | ||| | ||||||||||||||||||||||||| ||||||||  |||||||||||| |||||||    
T  32413636 tcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 6889182 - 6889255
Alignment:
Q  128 gttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcctactattacattaagttcttc 201  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||   |||||||||  ||| ||||||||||||    
T  6889182 gttcaaacttgcattctatccaaaagatggaacaatctctggaaatatcttcctacccttatattaagttcttc 6889255  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 7115609 - 7115536
Alignment:
Q  107 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 180  Q
    ||||||||| | ||| | || |||||||||||  ||||||||||||||||||  |||||||||||| |||||||    
T  7115609 tttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7115536  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 7120681 - 7120608
Alignment:
Q  107 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 180  Q
    ||||||||| | ||| | || |||||||||||  ||||||||||||||||||  |||||||||||| |||||||    
T  7120681 tttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7120608  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 7124085 - 7124012
Alignment:
Q  107 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 180  Q
    ||||||||| | ||| | || |||||||||||  ||||||||||||||||||  |||||||||||| |||||||    
T  7124085 tttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7124012  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 7140778 - 7140726
Alignment:
Q  128 gttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 180  Q
    ||||||||||| |||||||||||||||||||  ||| | |||||| |||||||    
T  7140778 gttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttcc 7140726  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 8680392 - 8680340
Alignment:
Q  128 gttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 180  Q
    ||||||||||| |||||||||||||||||||  ||| | |||||| |||||||    
T  8680392 gttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttcc 8680340  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 2255 - 2328
Alignment:
Q  107 tttttgaacgcaaaagaggccgttcaaacttgcattttgtccaaaagatggatcaatctctggaagggtcttcc 180  Q
    ||||||||| | ||| | || |||||||||||  ||||| ||||||||||||  |||||||||||| |||||||    
T  2255 tttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagtgtcttcc 2328  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 42602935 - 42602903
Alignment:
Q  126 ccgttcaaacttgcattttgtccaaaagatgga 158  Q
    |||||||||||||||| ||||||||||||||||    
T  42602935 ccgttcaaacttgcatcttgtccaaaagatgga 42602903  T

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