View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9133_high_23 (Length: 298)

Name: NF9133_high_23
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9133_high_23
NF9133_high_23
[»] chr8 (1 HSPs)
chr8 (13-298)||(27547712-27547998)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 27547712 - 27547998
Alignment:
Q  13 gtttcgtgtttgattttgcaatttaactgaagattatcactgttgttgcaatttccccg-taaaaacgtgtaatcttattgcaattgaactgaaaatata 111  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||  |||||||||| |||||||||||||||||||||||||||||    
T  27547712 gtttcgtgtttgattttgcaattgaactgaagattatcgctgttgttgcaattccccccctaaaaacgtgcaatcttattgcaattgaactgaaaatata 27547811  T
Q  112 tcttgttttgtgtttattcttattatgcactatgtacaaacatctaagaatttagctgggaagtggcaactgtagtacaagttccgtgtgtgtatgatag 211  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  27547812 tcttgttttgtgtttaatcttattatgcactatgtacagacatccaaggatttagcttggaagtggcaactgtagtacaagttgcgtgtgtgtatgatag 27547911  T
Q  212 atatgattttgagaacactgtttagattgaaagttgagataacaaatgaagtaagatcgagaaagcacagacattgacacgtcgaca 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||    
T  27547912 atatgattttgagaacactgtttagattgaaagttgagataacaaatgaagtaagatcgagaaagcacagctactgacacgtcgaca 27547998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University