View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_high_27 (Length: 284)
Name: NF9133_high_27
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 55113806 - 55113908
Alignment:
| Q |
57 |
caggttccgcaaaatgattaagaacagcaaac-gaagcagaagtttccaattcaaaatccctagaattatatatgaaaacgttttttctgagtttgattt |
155 |
Q |
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| T |
55113806 |
caggttccgcaaaatgattaagaacagcaaaaagaagcagaagtttccaattcaaaatccctagaattatatatgaaaacgttttttctgagtttgattt |
55113905 |
T |
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| Q |
156 |
gac |
158 |
Q |
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||| |
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| T |
55113906 |
gac |
55113908 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 55113972 - 55114020
Alignment:
| Q |
222 |
tgtgcatggatcctgaaaatacgtgaatgaattaacagcatcatgaagc |
270 |
Q |
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| T |
55113972 |
tgtgcatggatcctgaaaatacgtgaatgaattaacagcatcatgaagc |
55114020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 43114641 - 43114685
Alignment:
| Q |
226 |
catggatcctgaaaatacgtgaatgaattaacagcatcatgaagc |
270 |
Q |
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| T |
43114641 |
catggatcctcaaaatacaggaatgaattaacagcatcgtgaagc |
43114685 |
T |
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