View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9133_high_29 (Length: 270)

Name: NF9133_high_29
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9133_high_29
NF9133_high_29
[»] chr2 (18 HSPs)
chr2 (20-259)||(39814073-39814312)
chr2 (20-184)||(39910562-39910725)
chr2 (20-184)||(39927167-39927315)
chr2 (38-147)||(39825657-39825766)
chr2 (182-217)||(2841086-2841121)
chr2 (182-217)||(8973315-8973350)
chr2 (182-217)||(8979325-8979360)
chr2 (182-217)||(8984696-8984731)
chr2 (182-217)||(9008024-9008059)
chr2 (182-217)||(9023450-9023485)
chr2 (182-217)||(9026789-9026824)
chr2 (182-217)||(30732011-30732046)
chr2 (182-217)||(30733991-30734026)
chr2 (182-217)||(32918083-32918118)
chr2 (216-259)||(39910531-39910574)
chr2 (182-217)||(43850052-43850087)
chr2 (183-217)||(19232469-19232503)
chr2 (216-248)||(39927147-39927179)
[»] chr8 (5 HSPs)
chr8 (182-217)||(37679758-37679793)
chr8 (182-217)||(40054315-40054350)
chr8 (182-217)||(41841221-41841256)
chr8 (182-217)||(44878986-44879021)
chr8 (182-217)||(44880900-44880935)
[»] chr6 (2 HSPs)
chr6 (182-217)||(10791721-10791756)
chr6 (182-217)||(10795959-10795994)
[»] chr5 (3 HSPs)
chr5 (182-217)||(1716521-1716556)
chr5 (182-217)||(3643643-3643678)
chr5 (182-217)||(7524971-7525006)
[»] chr4 (7 HSPs)
chr4 (182-217)||(3461211-3461246)
chr4 (182-217)||(11652461-11652496)
chr4 (182-217)||(26984736-26984771)
chr4 (182-217)||(26998809-26998844)
chr4 (182-217)||(49106598-49106633)
chr4 (182-217)||(49108702-49108737)
chr4 (182-217)||(50077268-50077303)
[»] chr1 (18 HSPs)
chr1 (182-217)||(14652528-14652563)
chr1 (182-217)||(14654409-14654444)
chr1 (182-217)||(14662319-14662354)
chr1 (182-217)||(14664200-14664235)
chr1 (182-217)||(14667180-14667215)
chr1 (182-217)||(14669778-14669813)
chr1 (182-217)||(14674484-14674519)
chr1 (182-217)||(14676635-14676670)
chr1 (182-217)||(14679862-14679897)
chr1 (182-217)||(14681602-14681637)
chr1 (182-217)||(14683753-14683788)
chr1 (182-217)||(14706091-14706126)
chr1 (182-217)||(14708581-14708616)
chr1 (182-217)||(14716294-14716329)
chr1 (182-217)||(28366268-28366303)
chr1 (182-217)||(33988073-33988108)
chr1 (182-217)||(38175599-38175634)
chr1 (182-214)||(37422175-37422207)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 39814312 - 39814073
Alignment:
Q  20 gtcaaggacatctatttgaaagaatattgcgaattggatttgaattgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814312 gtcaaggacatctatttgaaagaatattgcgaattggatttgaattgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatc 39814213  T
Q  120 ttgattaaacgtttaagatctggctgaccgattaccataacgggattattactacacacaacctacacttgatcatagccaaaaggccgagaaaggtaca 219  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814212 ttgattaaacgtttaagatctggctgaccgattacaataacgggattatgactacacacaacctacacttgatcatagccaaaaggccgagaaaggtaca 39814113  T
Q  220 cacaacctagatccttacaaataaacatatacatagaata 259  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39814112 cacaacctagatccttacaaataaacatatacatagaata 39814073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 39910725 - 39910562
Alignment:
Q  20 gtcaaggacatctatttgaaagaatattgcgaattggatttgaattgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatc 119  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  39910725 gtcaaggacatctatt-gaaagaatattgtgaattggatttgaattgactgcaatgtgactaacacagccagctgtctgccacatctagaccgtctgata 39910627  T
Q  120 ttgattaaacgtttaagatctggctgaccgattaccataacgggattattactacacacaaccta 184  Q
    |||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  39910626 ttgattgaacgtttaagatctggctgaccggttacaataacgggattataactacacacaaccta 39910562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 39927315 - 39927167
Alignment:
Q  20 gtcaaggacatctatttgaaagaatattgcgaattggatttgaattgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatc 119  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||     |||||||||||||||||| |||||||||||           |||||    
T  39927315 gtcaaggacatctatttgaaacaatattgcgaactggatttgaattgtg-----tgtgactaacgcagccagttgtctgccaca-----------tgatc 39927232  T
Q  120 ttgattaaacgtttaagatctggctgaccgattaccataacgggattattactacacacaaccta 184  Q
    |||||| ||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||    
T  39927231 ttgattgaacgtttaagatctggcagaccggttacaataacgggattatgactacacacaaccta 39927167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 39825766 - 39825657
Alignment:
Q  38 aaagaatattgcgaattggatttgaattgtgtgcaatgtgacta-acgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaag 136  Q
    ||||| |||||||||| ||||||||| |||||||||| | |||  ||| || || ||||| ||||||||||||||||||||||  |||| ||||||||||    
T  39825766 aaagactattgcgaataggatttgaactgtgtgcaatctaacttcacg-agtcaactgtcagccacatctagaccgtctgatcaagattgaacgtttaag 39825668  T
Q  137 atctggctgac 147  Q
    || ||||||||    
T  39825667 atgtggctgac 39825657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 2841086 - 2841121
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  2841086 ctacacttgatcttagccaaaaggccgagaaaggta 2841121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 8973350 - 8973315
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  8973350 ctacacttgatcttagccaaaaggccgagaaaggta 8973315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 8979360 - 8979325
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  8979360 ctacacttgatcttagccaaaaggccgagaaaggta 8979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 8984731 - 8984696
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  8984731 ctacacttgatcttagccaaaaggccgagaaaggta 8984696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 9008059 - 9008024
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  9008059 ctacacttgatcttagccaaaaggccgagaaaggta 9008024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 9023485 - 9023450
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  9023485 ctacacttgatcttagccaaaaggccgagaaaggta 9023450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 9026824 - 9026789
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  9026824 ctacacttgatcttagccaaaaggccgagaaaggta 9026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 30732046 - 30732011
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  30732046 ctacacttgatcttagccaaaaggccgagaaaggta 30732011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 30734026 - 30733991
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  30734026 ctacacttgatcttagccaaaaggccgagaaaggta 30733991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 32918118 - 32918083
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  32918118 ctacacttgatcttagccaaaaggccgagaaaggta 32918083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 39910574 - 39910531
Alignment:
Q  216 tacacacaacctagatccttacaaataaacatatacatagaata 259  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||    
T  39910574 tacacacaacctagatcctaacaaataaacatataaatataata 39910531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 43850087 - 43850052
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  43850087 ctacacttgatcttagccaaaaggccgagaaaggta 43850052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 19232469 - 19232503
Alignment:
Q  183 tacacttgatcatagccaaaaggccgagaaaggta 217  Q
    ||||||||||| |||||||||||||||||||||||    
T  19232469 tacacttgatcttagccaaaaggccgagaaaggta 19232503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 39927179 - 39927147
Alignment:
Q  216 tacacacaacctagatccttacaaataaacata 248  Q
    |||||||||||||||||| ||||||||||||||    
T  39927179 tacacacaacctagatccgtacaaataaacata 39927147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 37679793 - 37679758
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  37679793 ctacacttgatcttagccaaaaggccgagaaaggta 37679758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 40054350 - 40054315
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  40054350 ctacacttgatcttagccaaaaggccgagaaaggta 40054315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 41841221 - 41841256
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  41841221 ctacacttgatcttagccaaaaggccgagaaaggta 41841256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 44879021 - 44878986
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  44879021 ctacacttgatcttagccaaaaggccgagaaaggta 44878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 44880900 - 44880935
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  44880900 ctacacttgatcttagccaaaaggccgagaaaggta 44880935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 10791721 - 10791756
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  10791721 ctacacttgatcttagccaaaaggccgagaaaggta 10791756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 10795959 - 10795994
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  10795959 ctacacttgatcttagccaaaaggccgagaaaggta 10795994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 1716521 - 1716556
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  1716521 ctacacttgatcttagccaaaaggccgagaaaggta 1716556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 3643678 - 3643643
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  3643678 ctacacttgatcttagccaaaaggccgagaaaggta 3643643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 7525006 - 7524971
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  7525006 ctacacttgatcttagccaaaaggccgagaaaggta 7524971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 3461211 - 3461246
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  3461211 ctacacttgatcttagccaaaaggccgagaaaggta 3461246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 11652461 - 11652496
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  11652461 ctacacttgatcttagccaaaaggccgagaaaggta 11652496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 26984736 - 26984771
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  26984736 ctacacttgatcttagccaaaaggccgagaaaggta 26984771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 26998809 - 26998844
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  26998809 ctacacttgatcttagccaaaaggccgagaaaggta 26998844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 49106598 - 49106633
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  49106598 ctacacttgatcttagccaaaaggccgagaaaggta 49106633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 49108702 - 49108737
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  49108702 ctacacttgatcttagccaaaaggccgagaaaggta 49108737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 50077268 - 50077303
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  50077268 ctacacttgatcttagccaaaaggccgagaaaggta 50077303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14652563 - 14652528
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14652563 ctacacttgatcttagccaaaaggccgagaaaggta 14652528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 14654409 - 14654444
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14654409 ctacacttgatcttagccaaaaggccgagaaaggta 14654444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14662354 - 14662319
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14662354 ctacacttgatcttagccaaaaggccgagaaaggta 14662319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 14664200 - 14664235
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14664200 ctacacttgatcttagccaaaaggccgagaaaggta 14664235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 14667180 - 14667215
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14667180 ctacacttgatcttagccaaaaggccgagaaaggta 14667215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 14669778 - 14669813
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14669778 ctacacttgatcttagccaaaaggccgagaaaggta 14669813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14674519 - 14674484
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14674519 ctacacttgatcttagccaaaaggccgagaaaggta 14674484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14676670 - 14676635
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14676670 ctacacttgatcttagccaaaaggccgagaaaggta 14676635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14679897 - 14679862
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14679897 ctacacttgatcttagccaaaaggccgagaaaggta 14679862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14681637 - 14681602
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14681637 ctacacttgatcttagccaaaaggccgagaaaggta 14681602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14683788 - 14683753
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14683788 ctacacttgatcttagccaaaaggccgagaaaggta 14683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14706126 - 14706091
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14706126 ctacacttgatcttagccaaaaggccgagaaaggta 14706091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14708616 - 14708581
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14708616 ctacacttgatcttagccaaaaggccgagaaaggta 14708581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 14716329 - 14716294
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  14716329 ctacacttgatcttagccaaaaggccgagaaaggta 14716294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 28366268 - 28366303
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  28366268 ctacacttgatcttagccaaaaggccgagaaaggta 28366303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 33988108 - 33988073
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  33988108 ctacacttgatcttagccaaaaggccgagaaaggta 33988073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 38175599 - 38175634
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaaggta 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  38175599 ctacacttgatcttagccaaaaggccgagaaaggta 38175634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 37422207 - 37422175
Alignment:
Q  182 ctacacttgatcatagccaaaaggccgagaaag 214  Q
    |||||||||||| ||||||||||||||||||||    
T  37422207 ctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University