View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_high_38 (Length: 240)
Name: NF9133_high_38
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24879197 - 24878975
Alignment:
| Q |
1 |
ttgaggaaatttgcataaaccaatgcaagatcaatattgggtctatcattcaccaatgaggaactagaagatgaaatattagtcctcaaaataggatcat |
100 |
Q |
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| T |
24879197 |
ttgaggaaatttgcataaaccaatgcaagatcaatattgggtctatcattcaccaatgaggaactagaagatgaaatattagtcctcaaaataggatcat |
24879098 |
T |
|
| Q |
101 |
aagaatgattgttatctaaagtagtgagagaattaggtgagtttttgaaagtgagagagtcaaaggatcgatgtcttactaaggttttgttgttacctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24879097 |
aagaatgattgttatctaaagtagtgagagaattaggtgagtttttgaaagtgagagagtcaaaggatcgatgtcttactaaggttttgttgttacctct |
24878998 |
T |
|
| Q |
201 |
tctgttttttctgcagccaccac |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
24878997 |
tctgttttttctgcagccaccac |
24878975 |
T |
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