View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_high_4 (Length: 557)
Name: NF9133_high_4
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Complemental strand, 546294 - 545765
Alignment:
| Q |
11 |
agcagagataaatacccttgaggtgatcatgttttggtagatgcagtcctatggggaagnnnnnnn-gggaaaaccattctcaccaatataaaggagaat |
109 |
Q |
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| T |
546294 |
agcagagataaatacccttgaggtgatcatgttttggtagatgcagtcctatggggaagaaaaaaaagggaaaaccattctcaccaatataaaggagaat |
546195 |
T |
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| Q |
110 |
tctggagtgtgttttgtgaggggagtatgctgagacattttatgtcaaaaggcacgagatatagtgattgtgttgagtatgcttaaaattagaaaacaga |
209 |
Q |
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| T |
546194 |
tctggagtgtgttttgtgaggggagtatgctgagacattttatgtcaaaaggcacgagatatagtgattgtgttgagtatgcttaaaattagaaaacaga |
546095 |
T |
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| Q |
210 |
ggagtataatggaaaatgccaatgcttgaaattctgttctatatcgaataatattgtgatgcaagtcgggatttgtatgcggtgcagttggttttatgca |
309 |
Q |
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| T |
546094 |
ggagtataatggaaaatgccaatgcttgaaattctgttctatatcgaataatattgtgatgcaagtcgggatttgtatgcggtgcagttggttttatgca |
545995 |
T |
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| Q |
310 |
atgctgtgaaattaaaattattttaaactctggtttgattgtaggattgattgaatgattttgatgcaactatatggtgatgatgttaaatgcaaacttt |
409 |
Q |
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| T |
545994 |
atgctgtgaaattaaaattattttaaactctggtttgattgtaggattgattgaatgattttgatgcaactatatggtgatgatgttaaatgcaaacttt |
545895 |
T |
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| Q |
410 |
taattttgatcaatatttgcagcggttccatattttcatgcttttaaaagttgtgcatttaatatgatgagatcaatgaagagatctgtttttatggaga |
509 |
Q |
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| T |
545894 |
taattttgatcaatatttgcagcggttccatattttcatgcttttaaaagttgtgcatttaatatgatgagatcaatgaagagatctgtttttatggaga |
545795 |
T |
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| Q |
510 |
tctctatcttggaatttgtttggttttcca |
539 |
Q |
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| T |
545794 |
tctctatcttggaatttgtttggttttcca |
545765 |
T |
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