View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_high_5 (Length: 554)
Name: NF9133_high_5
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 25336263 - 25335731
Alignment:
| Q |
1 |
ctaaaatagaaatatatggttaaggttgaattgcgtatgtgattgatagtaggtgagatacacggttttaatgtacttgaaacttagcatgagatacaaa |
100 |
Q |
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| T |
25336263 |
ctaaaatagaaatatatggttaaggttgaattgcgtatgtgattgatagtaggtgagatacacggttttaatgtacttgaaacttagcatgagatacaaa |
25336164 |
T |
|
| Q |
101 |
cttagatgaatttaattgtattggaatatgattttgtttgtatacatgatgtagtgatttgtcatataacattttttagacaattctatcacttttgagg |
200 |
Q |
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| T |
25336163 |
cttagctgaatttaattgtattgcaatatgattttgtttgtatacatgatgtagtgatt----aaataacattttttagacaattctatcacttttgagg |
25336068 |
T |
|
| Q |
201 |
aatgagtgagaatttgtttaccgtctgaaaatgataattagttggcacattcaaattatttctgttaataagtttcaatataagatgatataagttaata |
300 |
Q |
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| T |
25336067 |
aatgagtgagaatttgtttaccgtctgaaaatgataattagttggcacattcaaattatttctgttaataagtttcaatataagatgatataagttaata |
25335968 |
T |
|
| Q |
301 |
tatatcacatttggcctctttnnnnnnnnntataagatggcataatataatgtatttatttctctgagatttataaaacaagtaatgtttccatgcatga |
400 |
Q |
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|||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25335967 |
tatatcacatttggcctc-ttaaaaaaaaatataagatgacataatataatgtatttatttctctgagatttataaaacaagtaatgtttccatgcatga |
25335869 |
T |
|
| Q |
401 |
cccacaccatacatctttgtttcctagtgctaaactctgtttttctttatggtttgtgccaaattctgttttcaacaaggtaaatccgaatatctnnnnn |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25335868 |
cccacaccatacatctttgtttcctagtgctaaactctgtttttctttatggtttgtgccaaattctgttttcaacatggtaaatccgaatatccaaaaa |
25335769 |
T |
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| Q |
501 |
nntaaaagtaaatccaattaaaatattggattaaaact |
538 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25335768 |
aataaaagtaaatccaattaaaatattggattaaaact |
25335731 |
T |
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