View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_10 (Length: 569)
Name: NF9133_low_10
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 138 - 514
Target Start/End: Complemental strand, 40384862 - 40384486
Alignment:
| Q |
138 |
attctccattgtagtttcgatatcaacaacattttgaagagggatcactactacttgcagctgattctcattcatatcatctttgtgttctggtagcttt |
237 |
Q |
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| T |
40384862 |
attctccattgtagtttcgatatcaacaacattttgaagagggatcactactacttgcagctgattctcattcatatcatctttgtgttctggtagcttt |
40384763 |
T |
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| Q |
238 |
tgatcatttacaggcttgttttttctgtatattgcatacaacaccatctgaattgttccaaatgtgatacccacaaagttcggaagctgtcccacaaaaa |
337 |
Q |
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| T |
40384762 |
tgatcatttacaggtttgttttttctgtatattgcatacaacaccatctgaattgttccaaatgtgatacccacaaagttcggaagctgtcccacaaaaa |
40384663 |
T |
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| Q |
338 |
acattaataatgtgcatattagttaatagtatcaatccattaggacatacataataaaagccaaccaaaataccatagaaactnnnnnnnnntgttgaat |
437 |
Q |
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| T |
40384662 |
acattaataatgtgcatattagttaatagtatcaatccattaggacatacataataaaagccaaccaaaataccatataaactaaaaaaaaatgttgaat |
40384563 |
T |
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| Q |
438 |
taattactaagagaattggagattggtaaaataaatttggtcataagcttataactatttttgagatgctactagta |
514 |
Q |
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| T |
40384562 |
taattactaagagaattggagattggtaaaataaatttggtcataagcttataactatttttgagatgctactagta |
40384486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 40384983 - 40384930
Alignment:
| Q |
17 |
aagaaagacatcacacgtgcacaagtatcccttcaattcatcaaacttctcaac |
70 |
Q |
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| T |
40384983 |
aagaaagacatcacacgtgcacaagtatcccttcaattcatcaaacttctcaac |
40384930 |
T |
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