View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9133_low_100 (Length: 229)

Name: NF9133_low_100
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9133_low_100
NF9133_low_100
[»] chr7 (7 HSPs)
chr7 (8-229)||(28612461-28612682)
chr7 (11-179)||(29270180-29270348)
chr7 (18-182)||(29282563-29282727)
chr7 (18-194)||(29288020-29288196)
chr7 (15-74)||(28621610-28621669)
chr7 (21-129)||(28615034-28615142)
chr7 (152-193)||(28615165-28615206)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 28612682 - 28612461
Alignment:
Q  8 atatctctacaaggttaccttgtctgctgaccccattacaagcccaaatgattatgtcgttgcagccatttacggcttcgggcgtcttgctttcaaaaca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28612682 atatctctacaaggttaccttgtctgctgaccccattacaagcccaaatgattatgtcgttgcagccatttacggctttgggcgtcttgctttcaaaaca 28612583  T
Q  108 gtaaaccaaccattttggattcgagtagacgaaaaagagttttctttcaatgatgttgtattttataaaggcctgctaattgctgatcaagacggagact 207  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28612582 gcaaaccaaccattttggattcgagtagacaaaaaagagttttctttcaatgatgttgtattttataaaggcctgctaattgctgatcaagacggagagt 28612483  T
Q  208 acattgtatccttcaagatcaa 229  Q
    ||||||||||||||||||||||    
T  28612482 acattgtatccttcaagatcaa 28612461  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 29270180 - 29270348
Alignment:
Q  11 tctctacaaggttaccttgtctgctgaccccattacaagcccaaatgattatgtcgttgcagccatttacggcttcgggcgtcttgctttcaaaacagta 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||   || ||   ||| |||||||||| || |    
T  29270180 tctcaacaaggttaccttgtctgctgaccccattacaagcccaagtgattatgtggttgcagcgatttacaattttggttctctcgctttcaaaagagca 29270279  T
Q  111 aaccaaccattttggattcgagtagacgaaaaagagttttctttcaatgatgttgtattttataaaggc 179  Q
    | |||  | ||||||||||| | ||||  ||| || |||||||||| | |||||||||||||| |||||    
T  29270280 agccagtctttttggattcgtgcagacacaaatgaattttctttcactaatgttgtattttatgaaggc 29270348  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 29282563 - 29282727
Alignment:
Q  18 aaggttaccttgtctgctgaccccattacaagcccaaatgattatgtcgttgcagccatttacggcttcgggcgtcttgctttcaaaacagtaaaccaac 117  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||  ||||||   || ||   ||| |||||||||| |  || |||      
T  29282563 aaggttaccttgtctgctgacccctttacaagcccaagtgattatgtggttgcagtgatttacaattttggttctctcgctttcaaaagaccaagccagt 29282662  T
Q  118 cattttggattcgagtagacgaaaaagagttttctttcaatgatgttgtattttataaaggcctg 182  Q
    ||||||||||||| ||| ||  ||| || |||||||||| |||||||||||||||||||||||||    
T  29282663 cattttggattcgtgtaaacacaaatgaattttctttcactgatgttgtattttataaaggcctg 29282727  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 29288020 - 29288196
Alignment:
Q  18 aaggttaccttgtctgctgaccccattacaagcccaaatgattatgtcgttgcagccatttacggcttcgggcgtcttgctttcaaaacagtaaaccaac 117  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| |||||||  ||||||   ||  |   ||| |||||||||| |  || ||||     
T  29288020 aaggttaccttgtctgatgaccccattacaagcccaagtgattatgtggttgcagtgatttacaattttagttctctcgctttcaaaagaccaagccaat 29288119  T
Q  118 cattttggattcgagtagacgaaaaagagttttctttcaatgatgttgtattttataaaggcctgctaattgctgat 194  Q
    ||||||||||||| ||| ||  ||| || |||||||||| || |||||||||||||||||||||| || ||||||||    
T  29288120 cattttggattcgtgtaaacacaaatgaattttctttcactggtgttgtattttataaaggcctgatatttgctgat 29288196  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 28621610 - 28621669
Alignment:
Q  15 tacaaggttaccttgtctgctgaccccattacaagcccaaatgattatgtcgttgcagcc 74  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  28621610 tacaaggttaccttgtctgctgaccccatttcaagtccaaatgattatgtcgttgcagcc 28621669  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 28615034 - 28615142
Alignment:
Q  21 gttaccttgtctgctgaccccattacaagcccaaatgattatgtcgttgcagccatttacggcttcgggcgtcttgctttcaaaacagtaaaccaaccat 120  Q
    ||||| |||||||| |||||||| | ||||||| |||||||||| | ||  | |||||||  ||| || | | |||||||| ||| || |||||||||||    
T  28615034 gttacattgtctgccgaccccatcataagcccagatgattatgttgctgtcgtcatttacaactttggccatattgctttccaaagagcaaaccaaccat 28615133  T
Q  121 tttggattc 129  Q
    |||||||||    
T  28615134 tttggattc 28615142  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 28615165 - 28615206
Alignment:
Q  152 tttcaatgatgttgtattttataaaggcctgctaattgctga 193  Q
    |||||||||||||||||||||||||||| || || |||||||    
T  28615165 tttcaatgatgttgtattttataaaggcatgttagttgctga 28615206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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