View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9133_low_103 (Length: 223)

Name: NF9133_low_103
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9133_low_103
NF9133_low_103
[»] chr7 (3 HSPs)
chr7 (25-208)||(5181002-5181185)
chr7 (32-84)||(22803143-22803195)
chr7 (32-84)||(22869638-22869690)
[»] chr2 (3 HSPs)
chr2 (25-155)||(28105035-28105162)
chr2 (25-111)||(27967579-27967663)
chr2 (105-206)||(6188761-6188863)
[»] chr1 (1 HSPs)
chr1 (32-206)||(31297479-31297650)
[»] chr3 (2 HSPs)
chr3 (129-206)||(3667094-3667171)
chr3 (129-205)||(55287024-55287099)
[»] chr4 (1 HSPs)
chr4 (29-154)||(39624087-39624209)
[»] chr6 (2 HSPs)
chr6 (129-203)||(26370880-26370953)
chr6 (32-73)||(20868227-20868268)
[»] chr5 (1 HSPs)
chr5 (23-85)||(25579632-25579694)
[»] chr8 (1 HSPs)
chr8 (129-198)||(40237355-40237424)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 5181002 - 5181185
Alignment:
Q  25 catatgaaatcaatcaaacatttcaaaaatcatcttcttctctctaaaatcttaaaactcttactctcaaatattcatcaacaatttcttatttgtgtcg 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5181002 catatgaaatcaatcaaacatttcaaaaatcatcttcttctctctaaaaccttaaaactcttactctcaaatattcatcaacaatttcttgtttgtgtcg 5181101  T
Q  125 gatttattctaaatcattaaaattcctacaccaaagacttaaattttatcggtttatccttaaaatccattttttccgtctctg 208  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5181102 gatttattctaaatcattaaaatccctacaccaaagacttaaattttatcggtttatccttagaatccattttttccgtctctg 5181185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 22803143 - 22803195
Alignment:
Q  32 aatcaatcaaacatttcaaaaatcatcttcttctctctaaaatcttaaaactc 84  Q
    ||||||||||| ||||||| ||| |||||||||||||||||| | ||||||||    
T  22803143 aatcaatcaaatatttcaacaattatcttcttctctctaaaaccctaaaactc 22803195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 22869638 - 22869690
Alignment:
Q  32 aatcaatcaaacatttcaaaaatcatcttcttctctctaaaatcttaaaactc 84  Q
    ||||||||||| ||||||| ||| |||||||||||||||||| | ||||||||    
T  22869638 aatcaatcaaatatttcaacaattatcttcttctctctaaaaccctaaaactc 22869690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 28105162 - 28105035
Alignment:
Q  25 catatgaaatcaatcaaacatttcaaaaatcatcttcttctctctaaaatcttaaaactcttactctcaaatattcatcaacaatttcttatttgtgtcg 124  Q
    |||||||||||||||||||||||||| ||| |||||||   |||||||| | |||||||||||||||||||| ||||| |||||||| ||| |||| |||    
T  28105162 catatgaaatcaatcaaacatttcaataattatcttct---ctctaaaaccctaaaactcttactctcaaatgttcat-aacaatttattaattgtatcg 28105067  T
Q  125 gatt-tattctaaatcattaaaattcctacac 155  Q
    |||| |||||||||| |||| ||| |||||||    
T  28105066 gattctattctaaattattagaatccctacac 28105035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 27967579 - 27967663
Alignment:
Q  25 catatgaaatcaatcaaacatttcaaaaatcatcttcttctctctaaaatcttaaaactcttactctcaaatattcatcaacaattt 111  Q
    |||||||||||||||||||||||||| ||  ||  |||||||||||||| |  ||||||||||||||||||| ||||| ||||||||    
T  27967579 catatgaaatcaatcaaacatttcaacaaa-attatcttctctctaaaacccaaaaactcttactctcaaatgttcat-aacaattt 27967663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 6188761 - 6188863
Alignment:
Q  105 acaatttcttatttgtgtcggatt-tattctaaatcattaaaattcctacaccaaagacttaaattttatcggtttatccttaaaatccattttttccgt 203  Q
    |||||||||  ||||| ||| ||| |||||||||||| |||||| |||||||   ||| || |||||||||||||  ||| |||||| ||||||| ||||    
T  6188761 acaatttctcctttgtatcgaattctattctaaatcactaaaatacctacacttgagaattgaattttatcggttcgtccctaaaattcatttttaccgt 6188860  T
Q  204 ctc 206  Q
    |||    
T  6188861 ctc 6188863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 31297650 - 31297479
Alignment:
Q  32 aatcaatcaaacatttcaaaaatcatcttcttctctctaaaatcttaaaactcttactctcaaatattcatcaacaatttcttatttgtgtcggatt-ta 130  Q
    ||||||||||||||||||| ||| |||||||   |||||||| | |||||||||| |||||||||||||||  |||||||||  ||| | ||||||| ||    
T  31297650 aatcaatcaaacatttcaacaattatcttct---ctctaaaaccctaaaactcttgctctcaaatattcat-gacaatttctcctttatatcggattcta 31297555  T
Q  131 ttctaaatcattaaaattcctacaccaaagacttaaattttatcggtttatccttaaaatccattttttccgtctc 206  Q
    ||||||||||||| |||||||||||   ||||||  ||||| | |||| || | || ||||||||||| |||||||    
T  31297554 ttctaaatcattagaattcctacacttgagacttggatttttttggttcattcctagaatccatttttaccgtctc 31297479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 3667094 - 3667171
Alignment:
Q  129 tattctaaatcattaaaattcctacaccaaagacttaaattttatcggtttatccttaaaatccattttttccgtctc 206  Q
    ||||||||||||||| ||||||||||||  |||||| |||||||||||||  |||||| |||| |||||| |||||||    
T  3667094 tattctaaatcattagaattcctacacctgagacttgaattttatcggttcgtccttataatctatttttaccgtctc 3667171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 55287099 - 55287024
Alignment:
Q  129 tattctaaatcattaaaattcctacaccaaagacttaaattttatcggtttatccttaaaatccattttttccgtct 205  Q
    ||||||||||||||| ||||||||||    ||||||| ||||||| ||||| ||| || ||||||||||| ||||||    
T  55287099 tattctaaatcattagaattcctaca-ttgagacttagattttattggtttgtccatagaatccatttttaccgtct 55287024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 39624087 - 39624209
Alignment:
Q  29 tgaaatcaatcaaacatttcaaaaatcatcttcttctctctaaaatcttaaaactcttactctcaaatattcatcaacaatttcttatttgtgtcggatt 128  Q
    |||||||||||||||||||||| ||| |||||||   | |||||| |||| |||||||||||||||||||  || || |||||||  ||||| |||||||    
T  39624087 tgaaatcaatcaaacatttcaacaattatcttct---cgctaaaaccttagaactcttactctcaaatatgtat-aagaatttctcctttgtatcggatt 39624182  T
Q  129 -tattctaaatcattaaaattcctaca 154  Q
     ||||||| ||||||| ||| ||||||    
T  39624183 ctattctacatcattagaatccctaca 39624209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 26370880 - 26370953
Alignment:
Q  129 tattctaaatcattaaaattcctacaccaaagacttaaattttatcggtttatccttaaaatccattttttccgt 203  Q
    ||||||||||||||| ||||||||||||  ||||||  ||||||||||||  ||| || ||||||||||| ||||    
T  26370880 tattctaaatcattagaattcctacacc-gagacttggattttatcggttcgtccctagaatccatttttaccgt 26370953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 20868227 - 20868268
Alignment:
Q  32 aatcaatcaaacatttcaaaaatcatcttcttctctctaaaa 73  Q
    |||||||||||||||| || ||| ||||||||||||||||||    
T  20868227 aatcaatcaaacattttaacaattatcttcttctctctaaaa 20868268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 25579632 - 25579694
Alignment:
Q  23 cacatatgaaatcaatcaaacatttcaaaaatcatcttcttctctctaaaatcttaaaactct 85  Q
    ||||| || ||| ||||||||||||||||||  |||||||||||| ||||| | |||||||||    
T  25579632 cacatttggaattaatcaaacatttcaaaaactatcttcttctctttaaaaacctaaaactct 25579694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 40237355 - 40237424
Alignment:
Q  129 tattctaaatcattaaaattcctacaccaaagacttaaattttatcggtttatccttaaaatccattttt 198  Q
    ||||||||||||||| |||||||||| |  |||||| ||||||||||| || ||| ||  ||||||||||    
T  40237355 tattctaaatcattagaattcctacaactgagacttcaattttatcggattttccataggatccattttt 40237424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University