View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_105 (Length: 221)
Name: NF9133_low_105
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_105 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 31 - 207
Target Start/End: Complemental strand, 42595163 - 42594989
Alignment:
| Q |
31 |
atagcagtagtgtttgatggagcatccacaaaagcttactacattatacttccattccaagataagccattgattcttaggaaaaaagtacatgatacca |
130 |
Q |
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| T |
42595163 |
atagcagtagtgtttgatggagcatccacaaatgcttactacattatacttcaattccaaaataagccattgattcttaggaaaaaagtacatgatacca |
42595064 |
T |
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| Q |
131 |
caacgattcaactttgatagtccaacaaatttacttaacattacacatacttgggggtttactattattcagtataa |
207 |
Q |
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| T |
42595063 |
caacgattcaactttgatagtccaacaaatttacttaacattacacatactt--gggtttactattattcagtataa |
42594989 |
T |
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Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 16179438 - 16179618
Alignment:
| Q |
22 |
attcattacatagcagtagtgttt--gatggagcatccacaaaagcttactacattatacttccattccaagataagccattgattcttaggaaaaaagt |
119 |
Q |
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| T |
16179438 |
attcattacatagcagtagtgtatatgatgcagcatccacaaatgcttactacattatacttcca-----aaataagccattgattcttaggaaaaaagt |
16179532 |
T |
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| Q |
120 |
acatgataccacaacgattcaactttgatagtccaacaaatttacttaacattacacatacttgggggtttactattattcagtataa |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||| |
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| T |
16179533 |
acatgataccacaacgattcaactttgataatccaacaaatttacttaacattacacagactt--gaatttactattattcagtataa |
16179618 |
T |
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