View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_11 (Length: 568)
Name: NF9133_low_11
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Original strand, 47127865 - 47128399
Alignment:
| Q |
19 |
ccatcatcttgtagaaataggagtgttctagtggcataagtcttggtgttggtagagtttattctacttaggtatggcatcaaagcatcatgatgatcta |
118 |
Q |
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| T |
47127865 |
ccatcatcttgtagaaataggagtgttctggtggcataagtcttggtgttggtagagtttattctacttaggtatggcatcaaagcatcatgatgatcta |
47127964 |
T |
|
| Q |
119 |
atatatagagcttatcactttcaagagcctgcaacataaagaagtttgattcttgttagcgatatatgtagagtttataacattcaacatgaatttgact |
218 |
Q |
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| T |
47127965 |
atatatagagcttatcactttcaagagcctgcaacataaagaagtttgattcttgttagcgatatt------gattataacattcaacatgaatttgact |
47128058 |
T |
|
| Q |
219 |
tcattttcatacaacttttagtcaatgaataagtgaattttgatctctattagtacctcatctattgtaagcccatctaaactattttctatgtgctttg |
318 |
Q |
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| T |
47128059 |
tcattttcatacaacttttagtcaatgaataagtgaattttgatctctattagtacctcatctattgtaagcccatctaaactattttctatgtgctttg |
47128158 |
T |
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| Q |
319 |
cttggatgtaactgttttggtctccataaacacttgggtccagcttgctggcaggaggaaattcctatatgtacaagaaacattgaaacatattannnnn |
418 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47128159 |
cttggatggaactgttttggtctccataaacacttgggtccagcttgctggcaggaggaaattcctacatgtacaagaaacattgaaacatattattttt |
47128258 |
T |
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| Q |
419 |
nnataacaaggataagttttttaattaaaattgtaaactctgaactaaaatataagcagaaaatgtagatgtgcttggtcgaaattcagacaagtacata |
518 |
Q |
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| T |
47128259 |
ttataacaaggataagttttttaattaaaattgtaaactctgaactaaaatataagcagaaaatgtagatgtacttggtcgaaattcggacaagtacata |
47128358 |
T |
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| Q |
519 |
taaacttttttacgtatatttaagtccagagggagtattat |
559 |
Q |
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| T |
47128359 |
taaacttttttacgtatatttaagtccagagggagtattat |
47128399 |
T |
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