View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_12 (Length: 564)
Name: NF9133_low_12
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 314 - 545
Target Start/End: Complemental strand, 34580446 - 34580217
Alignment:
| Q |
314 |
gtaatttagccaaatttatacaaccattatactacgttattgagatggcgtctcaacaatatatatatcaaatccatttggttagaaatcattctgcatg |
413 |
Q |
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| T |
34580446 |
gtaatttagcaaaatttatacaaccattatactacgttattgagatggcgtctcaacaatatatat--caaatccatttggttagaaatcattctgcata |
34580349 |
T |
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| Q |
414 |
ctcaattcaccaagtaagctagctgcttgtaacagctatatatgtataaaattatacaaacattatatcacatgagaattacttattgtaattaacatga |
513 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
34580348 |
ctcagttcaccaagtaagctagctgcttgtaacagctatatatgtataaaattatgcaaacattataccacatgagaattacttattgtaattaatatgg |
34580249 |
T |
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| Q |
514 |
aaaattcaccaagttgctttaaagatacttca |
545 |
Q |
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| T |
34580248 |
aaaattcaccaagttgctttaaagatacttca |
34580217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 34580727 - 34580517
Alignment:
| Q |
34 |
aacccgcgtacgagaacgaaacaaaattgcagaaaaagaagtgttgcgtaggttgacaagctttggaccagaactttgagtgccgggataggactctacc |
133 |
Q |
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| T |
34580727 |
aacccacgtacgagaacaaaacaaaattgcaaaaaaagaagtgttgcgtaggttgacaagctttggaccagaactttgagtgccgggataggactcgacc |
34580628 |
T |
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| Q |
134 |
gctaacacggtagcaaatccacaaaccccaaccatttactatctcaaaaaacagtaaatttatggtgccatttctggccatacagtgtctaacattaata |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34580627 |
actaacacggtagcaaatccacaaaccccaaccatttactatctcaaaaaacagtaaatttatggtgccatttctggccatacagtgtctaacattaata |
34580528 |
T |
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| Q |
234 |
acttaatgcag |
244 |
Q |
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| T |
34580527 |
acttaatgcag |
34580517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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