View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9133_low_17 (Length: 552)

Name: NF9133_low_17
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9133_low_17
NF9133_low_17
[»] chr4 (6 HSPs)
chr4 (18-551)||(4332424-4332957)
chr4 (397-536)||(4350370-4350509)
chr4 (79-442)||(4356588-4356951)
chr4 (253-538)||(4323640-4323925)
chr4 (252-400)||(4129500-4129648)
chr4 (92-216)||(4323962-4324086)
[»] chr6 (10 HSPs)
chr6 (90-438)||(5422053-5422401)
chr6 (92-240)||(5173995-5174143)
chr6 (90-313)||(5358165-5358388)
chr6 (92-204)||(5092790-5092902)
chr6 (92-204)||(5160638-5160750)
chr6 (92-161)||(5149885-5149954)
chr6 (92-240)||(5272862-5273010)
chr6 (90-171)||(5070590-5070671)
chr6 (365-442)||(5340679-5340756)
chr6 (92-216)||(5107908-5108032)
[»] chr7 (1 HSPs)
chr7 (90-161)||(34715183-34715254)
[»] chr3 (1 HSPs)
chr3 (92-192)||(48016274-48016374)


Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Original strand, 4332424 - 4332957
Alignment:
Q  18 atatgaacatagacgttgatgacatgttcgctccaaaagatcggtttgatattcatagtataagaaagtacaatgtgttcttgagttttagaggcaaaga 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  4332424 atatgaacatagacgctgatgacatgttcgctccaaaagatcggtttgatattcatagtataagaaagtacgatgtgttcttgagttttagaggcgaaga 4332523  T
Q  118 cactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatcattcccttcaaaggggacatcgcatc 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332524 cactcgcgcatcattcacttcacatctctctacatctcttcaaagctctggaattatcgttttcaaggacgatcattcccttcaaaggggacatcgcatc 4332623  T
Q  218 tctaaaacactactacaagcaatccaggagtcgggaatttctgttgttgtcttctccaaaaactacgctgaatcgcaatggtgtcttcaagagttgatgc 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4332624 tctaaaacactactacaagcaatccaggagtcgagaatttctgttgttgtcttctccaaaaactacgctgattcgcaatggtgtcttcaagagttgatgc 4332723  T
Q  318 aaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgatgtacatccctcggaagttcgtagtcaaacaggtgactttggtaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332724 aaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgatgtacatccctcggaagttcgtagtcaaacaggtgactttggtaa 4332823  T
Q  418 agcttttcgaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttcgtaatgctgctggcattgcaggattt 517  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332824 agcttttcaaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttcgtaatgctgctggcattgcaggattt 4332923  T
Q  518 gttgttctaaattccaggttacttctctctctgc 551  Q
    ||||||||||||||||||||||||||||||||||    
T  4332924 gttgttctaaattccaggttacttctctctctgc 4332957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 397 - 536
Target Start/End: Original strand, 4350370 - 4350509
Alignment:
Q  397 tcaaacaggtgactttggtaaagcttttcgaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttcgtaat 496  Q
    |||||||||||| |||||| ||||||||| |||    ||||||| |||||||||||  |||||||||||||| ||||||||||||||||| |||||| ||    
T  4350370 tcaaacaggtgagtttggtgaagcttttcaaaaagcattgaacaaagttttaaaaggagatgaattcatggtaccaaagtggagagacgcacttcgtgat 4350469  T
Q  497 gctgctggcattgcaggatttgttgttctaaattccaggt 536  Q
    ||||||||| |||||||||||||||| || ||||||||||    
T  4350470 gctgctggccttgcaggatttgttgtcctgaattccaggt 4350509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 79 - 442
Target Start/End: Original strand, 4356588 - 4356951
Alignment:
Q  79 aagaaagtacaatgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgtt 178  Q
    |||||||||| ||||||| ||||||||||||||  |||||||| | ||||||||||||||||| ||  ||   |||||||||| | | |||||||| ||     
T  4356588 aagaaagtacgatgtgtttttgagttttagaggagaagacactagagcatcattcacttcacatcttactttctctcttcaaaacgccggaattattgtc 4356687  T
Q  179 ttcaaggacgatcattcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgggaatttctgttgttgtcttctccaaaa 278  Q
    |||||||||||||| || ||| |||| ||| | | ||| || | | |  |||| ||||||||| |    ||  ||||| ||||| | |||||||||||||    
T  4356688 ttcaaggacgatcagtcgcttgaaagaggagagcacatatccacatcgttactccaagcaatcgaaatctctagaattgctgttatcgtcttctccaaaa 4356787  T
Q  279 actacgctgaatcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgatgtaca 378  Q
    |||| ||||| |||  ||||||||| | ||||||| | ||||| |||  |||||  || || | | | || ||||||||||| |||||||| |||||  |    
T  4356788 actatgctgattcgtcatggtgtctgcgagagttggttcaaataatgtcgtgttacagtactataggccaagtggtactgccagtgttctatgatgttga 4356887  T
Q  379 tccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacaga 442  Q
     || || ||||||||| ||||||| ||||||||||||||| | |||| ||||||||||||||||    
T  4356888 cccttccgaagttcgtcgtcaaaccggtgactttggtaaatcatttcaaaatcttttgaacaga 4356951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 253 - 538
Target Start/End: Complemental strand, 4323925 - 4323640
Alignment:
Q  253 aatttctgttgttgtcttctccaaaaactacgctgaatcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtg 352  Q
    |||||||||| | |||||||| ||||||||||| || ||  | ||||||||||||||||||  |||||| |||| | ||   ||||||||| | |||||     
T  4323925 aatttctgttatagtcttctcaaaaaactacgccgattccaagtggtgtcttcaagagttgtggcaaataatggtgcgtcacagaaccacaggccaggtt 4323826  T
Q  353 gtactgcctgtgttctacgatgtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacagagttttaaaag 452  Q
    |||||||||||||||||||||||  |||| || |||||||||  |||||| ||||| ||||||||| | |||| |||||| ||||||||| ||| | | |    
T  4323825 gtactgcctgtgttctacgatgtcgatccttctgaagttcgtcatcaaactggtgagtttggtaaatcatttctaaatctattgaacagaatttcacatg 4323726  T
Q  453 tggatgaattcatggtgccaaagtggagagacgcgcttcgtaatgctgctggcattgcaggatttgttgttctaaattccaggtta 538  Q
     |||  |||  |||| |  | |||||||| | | |||||||  ||| |||||| |||| ||||||||||| |||||||||||||||    
T  4323725 aggagaaatggatggcgttagagtggagaaatgagcttcgtgttgcggctggccttgctggatttgttgtcctaaattccaggtta 4323640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 252 - 400
Target Start/End: Complemental strand, 4129648 - 4129500
Alignment:
Q  252 gaatttctgttgttgtcttctccaaaaactacgctgaatcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggt 351  Q
    |||||||| || |||| ||||||||||||||||| || || |  |||||| | || |||||||| |||||  |||||||||  ||||||||  |||||||    
T  4129648 gaatttctattattgtattctccaaaaactacgcggattcaccgtggtgtatgcaggagttgattcaaatactggagtgttacagaaccactggacaggt 4129549  T
Q  352 ggtactgcctgtgttctacgatgtacatccctcggaagttcgtagtcaa 400  Q
    ||||||||||||||||||||||||  |||| || || |||||| |||||    
T  4129548 ggtactgcctgtgttctacgatgtttatccgtctgatgttcgtcgtcaa 4129500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 4324086 - 4323962
Alignment:
Q  92 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 191  Q
    ||||| ||||||||  ||||  ||||||||||||||||||||| |||||| ||| |  |||||||||| | | | |||||  || |||||||||| ||||    
T  4324086 gtgtttttgagtttccgaggagaagacactcgcgcatcattcatttcacatctcacatcatctcttcagaacgccggaatcctcattttcaaggatgatc 4323987  T
Q  192 attcccttcaaaggggacatcgcat 216  Q
    | || |||||||| ||| ||| |||    
T  4323986 agtcgcttcaaagaggagatcacat 4323962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 90 - 438
Target Start/End: Original strand, 5422053 - 5422401
Alignment:
Q  90 atgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacga 189  Q
    |||||||||| |||||||||||  | || ||||| ||||||||||||||||| |||| | | ||||||||||  |  |||||||  ||||||| ||||||    
T  5422053 atgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatctctatgcttctcttcaaaattacggaattaaagttttcagggacga 5422152  T
Q  190 tcattcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgggaatttctgttgttgtcttctccaaaaactacgctgaa 289  Q
    | |||| |||||||| ||| ||| ||| || | | |||| |||| ||||||  |  ||||  |||| ||| |  | || ||||| | ||| ||||| ||     
T  5422153 tgattcgcttcaaagaggagatcacatttcaacatcactcctacgagcaattgaacagtctcgaatgtctatcatagttttctcaacaaattacgcggat 5422252  T
Q  290 tcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgatgtacatccctcggaag 389  Q
    || |||||||||||| | |||||| || |||| |||||||||   |||||||   ||||  | || ||||| ||||||| ||| ||| |||| || ||||    
T  5422253 tcacaatggtgtcttgatgagttgttgaaaataatggagtgtcacagaaccattggacaaattgttctgccggtgttcttcgacgtagatccatccgaag 5422352  T
Q  390 ttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaa 438  Q
    | ||| ||||||| ||||| ||||| ||||| |||| ||||||||||||    
T  5422353 tacgtcgtcaaaccggtgaatttggaaaagcatttcaaaatcttttgaa 5422401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 5173995 - 5174143
Alignment:
Q  92 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 191  Q
    |||||||| ||||| |||||| | ||||| ||| | ||||||||||||||||| |   | |||||||||| |  |||||||| |||||| |||||||||     
T  5173995 gtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacacctatacgcttctcttcaaaacaatggaattagcgtttttaaggacgatg 5174094  T
Q  192 attcccttcaaaggggacatcgcatctctaaaacactactacaagcaat 240  Q
    |||| |||||||| ||| ||| ||| || ||| ||||||||||||||||    
T  5174095 attcacttcaaagaggagatcacatttcaaaatcactactacaagcaat 5174143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 313
Target Start/End: Complemental strand, 5358388 - 5358165
Alignment:
Q  90 atgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctct-ggaattatcgttttcaaggacg 188  Q
    |||||||||||||||| |||||  | |||||||  || |  ||||||||||| |||| | | || |||||||  ||| ||||| | |||||| ||||| |    
T  5358388 atgtgttcttgagtttcagaggagaggacactcatgcttgcttcacttcacatctctatgcttcccttcaaaa-tctcggaatcaacgtttttaaggatg 5358290  T
Q  189 atcattcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgggaatttctgttgttgtcttctccaaaaactacgctga 288  Q
    ||||||| |||||||||||| ||| ||| || ||| ||||| | |||||||| || || ||   |||||||||| | || ||||| | ||| || || ||    
T  5358289 atcattcacttcaaaggggagatcacatttcaaaatcactaatgcaagcaattcaagattctcaaatttctgttatcgttttctcaacaaattatgcaga 5358190  T
Q  289 atcgcaatggtgtcttcaagagttg 313  Q
    |||||||||||||||| ||||||||    
T  5358189 atcgcaatggtgtcttgaagagttg 5358165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 5092790 - 5092902
Alignment:
Q  92 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 191  Q
    |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||| | | || |||||||   |||||||||  ||||| | ||| |||     
T  5092790 gtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgcttcacttcaaaatgctggaattaatgtttttagggatgatg 5092889  T
Q  192 attcccttcaaag 204  Q
    |||| ||||||||    
T  5092890 attcgcttcaaag 5092902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 5160750 - 5160638
Alignment:
Q  92 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 191  Q
    |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||| | |  | ||||||| | ||||| ||| |||||| | |||||||     
T  5160750 gtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgctgcacttcaaaacgctggacttaacgtttttagggacgatg 5160651  T
Q  192 attcccttcaaag 204  Q
    |||| ||| ||||    
T  5160650 attctcttgaaag 5160638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 5149954 - 5149885
Alignment:
Q  92 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaa 161  Q
    |||||||| |||||||||||  |||| || |||||||||||||||||||| |||| | | ||||||||||    
T  5149954 gtgttcttaagttttagaggggaagatacgcgcgcatcattcacttcacatctctatgcttctcttcaaa 5149885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 5272862 - 5273010
Alignment:
Q  92 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 191  Q
    |||||||| ||||| |||||| | ||||| ||| | |||||||||||||| || |   | |||||||||| |  |||||||| |||||| |||||| ||     
T  5272862 gtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacatctatacgcttctcttcaaaacaatggaattaacgtttttaaggacaatg 5272961  T
Q  192 attcccttcaaaggggacatcgcatctctaaaacactactacaagcaat 240  Q
    |||  |||||||| ||| ||| ||| || ||| ||||||||| ||||||    
T  5272962 atttacttcaaagaggagatcacatttcaaaatcactactactagcaat 5273010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 5070671 - 5070590
Alignment:
Q  90 atgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaat 171  Q
    |||||||||| ||||| |||||  | ||||||||| | |||||||||||||| |||| | | ||||||| || |||||||||    
T  5070671 atgtgttcttaagtttcagaggagaggacactcgctcttcattcacttcacatctctatgcttctcttcgaaactctggaat 5070590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 5340679 - 5340756
Alignment:
Q  365 ttctacgatgtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacaga 442  Q
    |||||||||||  ||||||| ||| | |||  ||||||||| || ||||| ||||| |||| ||||||||||||||||    
T  5340679 ttctacgatgttgatccctcagaaatacgtcatcaaacaggagagtttggaaaagcatttcaaaatcttttgaacaga 5340756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 5108032 - 5107908
Alignment:
Q  92 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 191  Q
    |||||| | ||||| ||||||||||| ||||| || || ||||||||||| |||| | | |||||||| | | ||||||| | |||||| |  ||||||     
T  5108032 gtgttcctaagtttcagaggcaaagatactcgtgcttccttcacttcacatctctatgcttctcttcagaacgctggaatcaacgtttttagagacgatg 5107933  T
Q  192 attcccttcaaaggggacatcgcat 216  Q
    |||| ||| |||| |||||| ||||    
T  5107932 attcgcttaaaagaggacattgcat 5107908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 34715254 - 34715183
Alignment:
Q  90 atgtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaa 161  Q
    |||||||||||||||| ||||| ||||| ||||||| |  ||| |||||||| |||| ||| ||||||||||    
T  34715254 atgtgttcttgagtttcagagggaaagatactcgcgaaagattgacttcacatctctatacctctcttcaaa 34715183  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 48016374 - 48016274
Alignment:
Q  92 gtgttcttgagttttagaggcaaagacactcgcgcatcattcacttcacacctctctacatctcttcaaagctctggaattatcgttttcaaggacgatc 191  Q
    |||||| | |||||| ||||||||||||| || || || || ||||| || |||| | | |||||||||| ||||||||||| |||||  | ||||||||    
T  48016374 gtgttcctaagttttcgaggcaaagacacacgtgcttcctttacttcgcatctctatgcttctcttcaaaactctggaattaacgtttatagggacgatc 48016275  T
Q  192 a 192  Q
    |    
T  48016274 a 48016274  T

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