View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9133_low_20 (Length: 548)

Name: NF9133_low_20
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9133_low_20
NF9133_low_20
[»] scaffold0257 (2 HSPs)
scaffold0257 (71-503)||(23467-23899)
scaffold0257 (71-112)||(23872-23913)
[»] chr6 (17 HSPs)
chr6 (68-503)||(19996336-19996771)
chr6 (70-124)||(1605578-1605632)
chr6 (70-124)||(7761300-7761354)
chr6 (70-124)||(29260191-29260245)
chr6 (71-124)||(30734707-30734760)
chr6 (69-124)||(15064918-15064973)
chr6 (70-124)||(17942442-17942496)
chr6 (71-124)||(8626482-8626535)
chr6 (71-123)||(4129435-4129487)
chr6 (78-124)||(13757215-13757261)
chr6 (78-120)||(30734836-30734878)
chr6 (70-112)||(19996321-19996363)
chr6 (86-123)||(31559961-31559998)
chr6 (86-124)||(8235639-8235677)
chr6 (67-99)||(4147927-4147959)
chr6 (69-109)||(15064693-15064733)
chr6 (67-99)||(32671812-32671844)
[»] chr5 (15 HSPs)
chr5 (71-502)||(15304837-15305265)
chr5 (70-124)||(16983257-16983311)
chr5 (71-124)||(12807077-12807130)
chr5 (71-124)||(25773649-25773702)
chr5 (71-124)||(30720716-30720769)
chr5 (71-124)||(40886834-40886887)
chr5 (70-124)||(37900848-37900902)
chr5 (71-124)||(36561323-36561376)
chr5 (69-124)||(10285281-10285336)
chr5 (82-123)||(7277647-7277688)
chr5 (70-112)||(15304821-15304863)
chr5 (203-241)||(31485620-31485658)
chr5 (67-99)||(8086264-8086296)
chr5 (68-112)||(23098463-23098506)
chr5 (67-99)||(33587703-33587735)
[»] chr8 (26 HSPs)
chr8 (254-503)||(45278026-45278275)
chr8 (254-503)||(41305776-41306025)
chr8 (254-471)||(10647072-10647289)
chr8 (70-245)||(8697777-8697952)
chr8 (70-245)||(41307840-41308015)
chr8 (71-245)||(45278580-45278754)
chr8 (78-243)||(10646599-10646764)
chr8 (71-245)||(40486332-40486506)
chr8 (71-124)||(27034997-27035050)
chr8 (70-124)||(40918953-40919007)
chr8 (71-124)||(3585451-3585504)
chr8 (71-124)||(7146913-7146966)
chr8 (71-124)||(43275621-43275674)
chr8 (68-124)||(2540155-2540211)
chr8 (69-124)||(40058527-40058582)
chr8 (70-124)||(11646549-11646603)
chr8 (70-124)||(30999745-30999799)
chr8 (71-124)||(11174447-11174500)
chr8 (71-124)||(37345571-37345624)
chr8 (71-123)||(36068080-36068132)
chr8 (62-99)||(617017-617054)
chr8 (62-99)||(623410-623447)
chr8 (69-112)||(41305760-41305803)
chr8 (71-99)||(18044425-18044453)
chr8 (71-115)||(20546520-20546564)
chr8 (80-112)||(45278021-45278053)
[»] chr3 (35 HSPs)
chr3 (254-503)||(44276789-44277038)
chr3 (254-503)||(19911952-19912201)
chr3 (254-503)||(12095201-12095450)
chr3 (313-503)||(38806178-38806368)
chr3 (70-245)||(12094581-12094756)
chr3 (70-245)||(44277334-44277509)
chr3 (71-245)||(19911509-19911683)
chr3 (71-230)||(38805245-38805404)
chr3 (71-241)||(40931622-40931792)
chr3 (80-224)||(4226716-4226856)
chr3 (308-473)||(4227369-4227540)
chr3 (80-224)||(4235760-4235900)
chr3 (308-448)||(4236415-4236562)
chr3 (70-124)||(29375137-29375191)
chr3 (7-72)||(40662016-40662081)
chr3 (68-124)||(3383073-3383129)
chr3 (70-124)||(32835180-32835234)
chr3 (71-124)||(27707388-27707441)
chr3 (71-124)||(36881282-36881335)
chr3 (70-124)||(13364842-13364896)
chr3 (70-124)||(19241892-19241946)
chr3 (70-124)||(43750136-43750190)
chr3 (71-124)||(198855-198908)
chr3 (70-124)||(13702768-13702822)
chr3 (71-124)||(46694334-46694387)
chr3 (69-112)||(19912174-19912217)
chr3 (69-112)||(38806341-38806384)
chr3 (70-114)||(48963155-48963199)
chr3 (215-245)||(38805395-38805425)
chr3 (78-112)||(44276782-44276816)
chr3 (71-112)||(12095423-12095464)
chr3 (216-245)||(19911693-19911722)
chr3 (70-99)||(21005527-21005556)
chr3 (71-124)||(23088155-23088208)
chr3 (67-112)||(37293433-37293478)
[»] chr1 (29 HSPs)
chr1 (254-503)||(3943541-3943790)
chr1 (254-503)||(41959587-41959836)
chr1 (254-503)||(9589409-9589658)
chr1 (254-471)||(13984447-13984664)
chr1 (71-245)||(13984870-13985044)
chr1 (71-245)||(41959078-41959252)
chr1 (70-245)||(3943059-3943234)
chr1 (69-245)||(9588668-9588844)
chr1 (82-241)||(44228112-44228270)
chr1 (79-211)||(1168369-1168499)
chr1 (389-503)||(44227862-44227976)
chr1 (69-124)||(46771635-46771690)
chr1 (71-124)||(284333-284386)
chr1 (71-124)||(23045503-23045556)
chr1 (72-124)||(27211188-27211240)
chr1 (70-124)||(40783881-40783935)
chr1 (71-113)||(47038085-47038127)
chr1 (71-124)||(321626-321679)
chr1 (71-124)||(24772129-24772182)
chr1 (68-112)||(44227845-44227889)
chr1 (70-124)||(23526239-23526293)
chr1 (67-112)||(41959809-41959854)
chr1 (71-112)||(3943763-3943804)
chr1 (70-112)||(9589631-9589673)
chr1 (69-99)||(40977486-40977516)
chr1 (70-99)||(30003532-30003561)
chr1 (68-96)||(6766606-6766634)
chr1 (69-97)||(25171389-25171417)
chr1 (71-99)||(36399098-36399126)
[»] chr7 (16 HSPs)
chr7 (254-503)||(25059464-25059713)
chr7 (254-503)||(2910873-2911122)
chr7 (68-245)||(25060012-25060189)
chr7 (70-245)||(2911427-2911602)
chr7 (68-124)||(27813808-27813864)
chr7 (70-124)||(10981507-10981561)
chr7 (71-124)||(40348960-40349013)
chr7 (71-123)||(25614576-25614628)
chr7 (73-124)||(36453348-36453399)
chr7 (71-124)||(47110451-47110504)
chr7 (78-112)||(25059457-25059491)
chr7 (70-99)||(32431357-32431386)
chr7 (67-99)||(28061511-28061543)
chr7 (67-99)||(41898222-41898254)
chr7 (71-99)||(42890577-42890605)
chr7 (67-99)||(47156261-47156293)
[»] chr2 (14 HSPs)
chr2 (254-502)||(34222073-34222321)
chr2 (71-245)||(34224257-34224431)
chr2 (71-124)||(1102503-1102556)
chr2 (69-124)||(3518906-3518961)
chr2 (70-124)||(12969963-12970017)
chr2 (72-124)||(23366790-23366842)
chr2 (71-124)||(37673961-37674014)
chr2 (71-124)||(39938170-39938223)
chr2 (64-99)||(13125138-13125173)
chr2 (66-97)||(24093068-24093099)
chr2 (70-99)||(33607606-33607635)
chr2 (67-99)||(2183191-2183223)
chr2 (67-99)||(5405230-5405262)
chr2 (71-99)||(7608049-7608077)
[»] chr4 (19 HSPs)
chr4 (86-241)||(19361662-19361817)
chr4 (306-503)||(19362019-19362216)
chr4 (314-482)||(20543325-20543493)
chr4 (102-241)||(20541492-20541635)
chr4 (69-124)||(24706471-24706526)
chr4 (67-124)||(21661759-21661816)
chr4 (67-124)||(21670523-21670580)
chr4 (70-123)||(40122710-40122763)
chr4 (70-124)||(14261043-14261097)
chr4 (70-124)||(21310424-21310478)
chr4 (70-124)||(22321491-22321545)
chr4 (70-124)||(25704650-25704704)
chr4 (70-123)||(12071560-12071613)
chr4 (71-124)||(34324807-34324860)
chr4 (70-123)||(44568836-44568889)
chr4 (68-112)||(19362189-19362233)
chr4 (78-124)||(20249236-20249282)
chr4 (73-124)||(31892240-31892291)
chr4 (70-99)||(47386285-47386314)
[»] scaffold1431 (1 HSPs)
scaffold1431 (78-124)||(123-169)
[»] scaffold1770 (1 HSPs)
scaffold1770 (71-123)||(170-222)
[»] scaffold0054 (1 HSPs)
scaffold0054 (70-124)||(45453-45507)
[»] scaffold0056 (1 HSPs)
scaffold0056 (69-99)||(71194-71224)


Alignment Details
Target: scaffold0257 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 71 - 503
Target Start/End: Original strand, 23467 - 23899
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23467 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtctttg 23566  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattcatgggaaaataattaggagtagttag 270  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  23567 atttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattcataggaaaataattaggagtggttag 23666  T
Q  271 ttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaa 370  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  23667 ttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaatatttattagtggaaaa 23766  T
Q  371 taattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaa 470  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23767 taattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaa 23866  T
Q  471 caaaaaatttctctaaaatggacatgtattttg 503  Q
    |||||||||||||||||||||||||||||||||    
T  23867 caaaaaatttctctaaaatggacatgtattttg 23899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 23913 - 23872
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  23913 tactccatccgtttcaaaatacatgtccattttagagaaatt 23872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 68 - 503
Target Start/End: Complemental strand, 19996771 - 19996336
Alignment:
Q  68 taatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtct 167  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  19996771 taatactccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacctttgtct 19996672  T
Q  168 ttgacttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattcatgggaaaataattaggagtagt 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  19996671 ttgatttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattcataggaaaataattaggagtggt 19996572  T
Q  268 tagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtgga 367  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  19996571 tagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaatatttattagtgga 19996472  T
Q  368 aaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttg 467  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19996471 aaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttg 19996372  T
Q  468 aaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||||||||||    
T  19996371 aaacaaaaaatttctctaaaatggacatgtattttg 19996336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 1605578 - 1605632
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  1605578 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 1605632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 7761300 - 7761354
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  7761300 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 7761354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 29260191 - 29260245
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  29260191 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 29260245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 30734760 - 30734707
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30734760 tactcaatccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 30734707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 15064973 - 15064918
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| |||||||    
T  15064973 aatactccctccgtttcaaaatacatgtccattttagagaaattgcagcaaccaag 15064918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 17942442 - 17942496
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||||||||    
T  17942442 atactcccttcgtttcaaaatacatgtccatttttgagaaattgcagtaaccaag 17942496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 8626482 - 8626535
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  8626482 tactccctccgtttcaaaatacatgtccattttgaagaaattgcattaaccaag 8626535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 4129435 - 4129487
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 123  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  4129435 tactccctccgtttcaaaatacatatccactttggagaaattgcagtaaccaa 4129487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 13757215 - 13757261
Alignment:
Q  78 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  13757215 tccgtttcaaaatacatgtccattttggagaaattacactaaccaag 13757261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 30734878 - 30734836
Alignment:
Q  78 tccgtttcaaaatacatgtccattttggagaaattgcagtaac 120  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  30734878 tccgtttcaaaatacatgtccattttgaagaaattgcagtaac 30734836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 19996321 - 19996363
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  19996321 atactccctccgtttcaaaatacatgtccattttagagaaatt 19996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 31559998 - 31559961
Alignment:
Q  86 aaaatacatgtccattttggagaaattgcagtaaccaa 123  Q
    |||||||||||||||||||||||||||||| |||||||    
T  31559998 aaaatacatgtccattttggagaaattgcattaaccaa 31559961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 8235639 - 8235677
Alignment:
Q  86 aaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  8235639 aaaatacatgtacattttgaagaaattgcagtaaccaag 8235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 4147927 - 4147959
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  4147927 ataatactccctccgtttcaaaatacatgtcca 4147959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 15064693 - 15064733
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaa 109  Q
    |||||||| ||||||||| ||||| ||||||||||||||||    
T  15064693 aatactccctccgtttcataatacttgtccattttggagaa 15064733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 32671812 - 32671844
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  32671812 ataatactccctccgtttcaaaatacatgtcca 32671844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 71 - 502
Target Start/End: Complemental strand, 15305265 - 15304837
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||||||||| |||||||||||||||||||    
T  15305265 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaact---gacaagcaagtttgacacaaaagttcctattatacccttgtctttg 15305169  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattcatgggaaaataattaggagtagttag 270  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15305168 atttcatccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattcatgggaaaataatttggagtagttag 15305069  T
Q  271 ttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaa 370  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15305068 ttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaa 15304969  T
Q  371 taattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaa 470  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15304968 taattattgtggagaaaatctagaatccaattaattggtagataagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaa 15304869  T
Q  471 caaaaaatttctctaaaatggacatgtatttt 502  Q
    ||||||||||||||||||||||||||||||||    
T  15304868 caaaaaatttctctaaaatggacatgtatttt 15304837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 16983257 - 16983311
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  16983257 atactccctctgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 16983311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 12807130 - 12807077
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  12807130 tactccctccgtttcaaaatacatgtccattttggagaaattgcattaaccaag 12807077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 25773649 - 25773702
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  25773649 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 25773702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 30720769 - 30720716
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  30720769 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 30720716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 40886887 - 40886834
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  40886887 tactccatccgtttcaaaatacatgttcattttggagaaattgcactaaccaag 40886834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 37900902 - 37900848
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||||||||    
T  37900902 atactccctccgtttcaaaatacacatccattttggagaaattgcagtaaccaag 37900848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 36561376 - 36561323
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  36561376 tactccatccgtttcaaaatacatgtccattttagaaaaattgcagtaatcaag 36561323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 10285336 - 10285281
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  10285336 aatactccctccgtttcaaaatagatgtctattttggagaaattgcattaaccaag 10285281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 7277688 - 7277647
Alignment:
Q  82 tttcaaaatacatgtccattttggagaaattgcagtaaccaa 123  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  7277688 tttcaaaatacatgtctattttggagaaattggagtaaccaa 7277647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 15304821 - 15304863
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||    
T  15304821 atactccctccgttttaaaatacatgtccattttagagaaatt 15304863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 31485620 - 31485658
Alignment:
Q  203 tcataattactcccaataccaataccaaaattaattaaa 241  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  31485620 tcataattacttcgaataccaataccaaaattaattaaa 31485658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 8086296 - 8086264
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  8086296 ataatactccctccgtttcaaaatacatgtcca 8086264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 23098506 - 23098463
Alignment:
Q  68 taatactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||    
T  23098506 taatactccatccgtttc-aaatacatgtccaatttgaagaaatt 23098463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 33587735 - 33587703
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtcca 99  Q
    ||||||||||||| |||||||||||||||||||    
T  33587735 ataatactccatctgtttcaaaatacatgtcca 33587703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 254 - 503
Target Start/End: Complemental strand, 45278275 - 45278026
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45278275 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa 45278176  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45278175 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 45278076  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278075 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 45278026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 254 - 503
Target Start/End: Complemental strand, 41306025 - 41305776
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  41306025 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagagtgcatgagtaaatctacttaaaattgggtcaa 41305926  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41305925 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatatatccttaaactatgaaat 41305826  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41305825 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 41305776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 254 - 471
Target Start/End: Original strand, 10647072 - 10647289
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  10647072 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagagtgcatgagtaaatctacttaaaattgggtcaa 10647171  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10647172 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 10647271  T
Q  454 ggacatgtattttgaaac 471  Q
    ||||||||||||||||||    
T  10647272 ggacatgtattttgaaac 10647289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 70 - 245
Target Start/End: Complemental strand, 8697952 - 8697777
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtcttt 169  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  8697952 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaaactagtttgacacaaaagttcctattatacccttgtcttt 8697853  T
Q  170 gacttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697852 gatttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 8697777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 70 - 245
Target Start/End: Complemental strand, 41308015 - 41307840
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtcttt 169  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41308015 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtcttt 41307916  T
Q  170 gacttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41307915 gatttcctccattttacatttatttaccccatctcataattactcccaataccaatatcaaaattaattaaattca 41307840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 45278754 - 45278580
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  45278754 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctaatttgacacaaaagttcctattatacccttgtctttg 45278655  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278654 atttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 45278580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 10646599 - 10646764
Alignment:
Q  78 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10646599 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcct 10646698  T
Q  178 ccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaatt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10646699 ccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaatt 10646764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 40486506 - 40486332
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  40486506 tactccctccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaaggacaagctaatttgacacaaaagttcctattatacccttgtctttg 40486407  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40486406 atttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 40486332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 27034997 - 27035050
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27034997 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 27035050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 40919007 - 40918953
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  40919007 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 40918953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 3585451 - 3585504
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3585451 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 3585504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 7146913 - 7146966
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  7146913 tactccttccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaag 7146966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 43275674 - 43275621
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  43275674 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 43275621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 2540211 - 2540155
Alignment:
Q  68 taatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||    
T  2540211 taatacttcctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 2540155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 40058582 - 40058527
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  40058582 aatactccctccgtttcaaaatacatgtccatttcggagaaattgcactaaccaag 40058527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 11646603 - 11646549
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| ||||||||    
T  11646603 atactcccttcgtttcaaaatacatgtccattttggagaaattgcactaaccaag 11646549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 30999799 - 30999745
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  30999799 atactcgatccgtttcaaaatacatgtcaattttggagaaattgcactaaccaag 30999745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 11174500 - 11174447
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  11174500 tactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaag 11174447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 37345571 - 37345624
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||  |||||||    
T  37345571 tactccctccgtttcaaaatacatgtccattttgaagaaattgcaccaaccaag 37345624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 36068080 - 36068132
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 123  Q
    |||||| |||||||||||||||||||||||||||||| ||||| | |||||||    
T  36068080 tactccctccgtttcaaaatacatgtccattttggaggaattgtactaaccaa 36068132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 617054 - 617017
Alignment:
Q  62 cttgcataatactccatccgtttcaaaatacatgtcca 99  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  617054 cttgcataatactccctccgtttcaaaatacatgtcca 617017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 623447 - 623410
Alignment:
Q  62 cttgcataatactccatccgtttcaaaatacatgtcca 99  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  623447 cttgcataatactccctccgtttcaaaatacatgtcca 623410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 41305760 - 41305803
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||||  |||||||||||||||||||||||||| ||||||||    
T  41305760 aatactctctccgtttcaaaatacatgtccattttagagaaatt 41305803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 18044425 - 18044453
Alignment:
Q  71 tactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||||||||||||||||||||||    
T  18044425 tactccatccgtttcaaaatacatgtcca 18044453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 20546564 - 20546520
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgca 115  Q
    |||||| ||| |||||||||| |||||||||||| ||||||||||    
T  20546564 tactccctccatttcaaaatatatgtccattttgaagaaattgca 20546520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 45278021 - 45278053
Alignment:
Q  80 cgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||||||||||||||||||||| ||||||||    
T  45278021 cgtttcaaaatacatgtccattttagagaaatt 45278053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 254 - 503
Target Start/End: Complemental strand, 44277038 - 44276789
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44277038 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa 44276939  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44276938 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 44276839  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44276838 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 44276789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 254 - 503
Target Start/End: Original strand, 19911952 - 19912201
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  19911952 taattaggagtagttaattacgatggattagagtgcagtagtcatgggaaaataatttcttggaagagtgcatgagtaaatctacttaaaattgggtcaa 19912051  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19912052 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 19912151  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19912152 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 19912201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 254 - 503
Target Start/End: Original strand, 12095201 - 12095450
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  12095201 taattagaagtagttagttacgatagattagagtggagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcta 12095300  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  12095301 catttattagtggaaaataattattgtgaagaaaatctagaatccaattaattggtagacaagggtaaaatagataaaatgcatccttaaactatgaaat 12095400  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12095401 ggacatgtattttgaaacaaaaaatttctctaaaatggacatatattttg 12095450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 313 - 503
Target Start/End: Original strand, 38806178 - 38806368
Alignment:
Q  313 ttgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtaga 412  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  38806178 ttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattatggagaaaatctagaatccaattaattggtaga 38806277  T
Q  413 caagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38806278 caagggtaaaatagacaaaatgtatccttaaactatgaaatagacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 38806368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 12094581 - 12094756
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtcttt 169  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12094581 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtcttt 12094680  T
Q  170 gacttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12094681 gatttcctctattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 12094756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 70 - 245
Target Start/End: Complemental strand, 44277509 - 44277334
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtcttt 169  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44277509 atactccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtcttt 44277410  T
Q  170 gacttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44277409 gattttctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 44277334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 19911509 - 19911683
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  19911509 tactccctccgtttcaaaatacatgttcattttggagaaattgcagtaaccaaggacaagttagtttgacacaaaagttcctattatacccttgtctttg 19911608  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19911609 atttcctccattttacatttatttaccccacctcataattactcccaataccaataccaaaattaattaaattca 19911683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 38805245 - 38805404
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38805245 tactccctccgttttaaaatacatgtccattttagagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtctttg 38805344  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaa 230  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38805345 atttcctccattttacatttatttaccccatctcataattactcccaataccaataccaa 38805404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 40931622 - 40931792
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||||||||||| |||||||||||| |||||  | ||||| || |||||||| ||||||||| || |||||||||||| |||||||| ||||||||||    
T  40931622 tactccatccgttttaaaatacatgtctattttaaaaaaattacattaaccaagcacaagctagattaacacaaaagttcctattatactcttgtctttg 40931721  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaa 241  Q
    | |||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40931722 atttcctccattttatgtttatttaccccatctcatagttactcccaataccaataccaaaattaattaaa 40931792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 4226716 - 4226856
Alignment:
Q  80 cgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctcc 179  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||| |||||||    
T  4226716 cgtttcaaaatacatgtcg-ttttggagaaattgcagtaaccaaggacaaactagtttgacac-aaagttcctattatacccttgtgtttgatttcctcc 4226813  T
Q  180 attttacatttatttaccccatctcataattactcccaataccaa 224  Q
    |||||  |||||||||||||||||||||||||||| |||||||||    
T  4226814 atttt--atttatttaccccatctcataattactctcaataccaa 4226856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 308 - 473
Target Start/End: Original strand, 4227369 - 4227540
Alignment:
Q  308 atttcttgggagagtgcatgaataaatctacttaaaattgggtcaaca-------tttattagtggaaaataattattgtggagaaaatctagaatccaa 400  Q
    ||||||||||||| |||||||||||||| ||||||||||||  |||||       |||||||||||||||||||||||||||||||||| ||||||||||    
T  4227369 atttcttgggagactgcatgaataaatccacttaaaattggaccaacacattatatttattagtggaaaataattattgtggagaaaatttagaatccaa 4227468  T
Q  401 ttaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaa 473  Q
    |||||| |||| ||||||||||||| |||||||||||||||||| ||| |||   ||||||||||| ||||||    
T  4227469 ttaatt-gtaggcaagggtaaaatatacaaaatgtatccttaaattatcaaaaatacatgtatttttaaacaa 4227540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 4235760 - 4235900
Alignment:
Q  80 cgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctcc 179  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||| ||||| |||||||    
T  4235760 cgtttcaaaatacatgtcg-ttttggagaaattgcactaaccaaggacaagctagtttgatac-aaagttcctattatacccttgtgtttgatttcctcc 4235857  T
Q  180 attttacatttatttaccccatctcataattactcccaataccaa 224  Q
    |||||  |||||||||||| ||||||||||||||| |||||||||    
T  4235858 atttt--atttatttacccaatctcataattactctcaataccaa 4235900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 308 - 448
Target Start/End: Original strand, 4236415 - 4236562
Alignment:
Q  308 atttcttgggagagtgcatgaataaatctacttaaaattgggtcaaca-------tttattagtggaaaataattattgtggagaaaatctagaatccaa 400  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||||       |||||||||||||||||||||||||||||||||| ||||||||||    
T  4236415 atttcttgggagagtgcatgaataaatccacttaaaattggaccaacacattatatttattagtggaaaataattattgtggagaaaatttagaatccaa 4236514  T
Q  401 ttaattagtagacaagggtaaaatagacaaaatgtatccttaaactat 448  Q
    ||||||   || ||||||||||||| | ||||||||||||||||||||    
T  4236515 ttaattgcaaggcaagggtaaaatatataaaatgtatccttaaactat 4236562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 29375137 - 29375191
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29375137 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 29375191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 40662081 - 40662016
Alignment:
Q  7 tacagattatttactaaaaaggtcttcaaactccaacgagagttgaatacacatccttgcataata 72  Q
    |||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  40662081 tacatattatttattaaaaaggtcttcaaactccaataagagttgaatacacatccttgcataata 40662016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 3383073 - 3383129
Alignment:
Q  68 taatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  3383073 taatactccttccgtttcaaaatatatgtccattttggagaaattgcagtaaccaag 3383129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 32835234 - 32835180
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32835234 atactcaatccgtttcaaaatacatgtccattttggagaaattgcaataaccaag 32835180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 27707441 - 27707388
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  27707441 tactccctccgtttcgaaatacatgtccattttggagaaattgcagtaaccaag 27707388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 36881282 - 36881335
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  36881282 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 36881335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 13364842 - 13364896
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  13364842 atactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaag 13364896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 19241946 - 19241892
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  19241946 atactccctccgtttcaaaatacatgtccattttggtgaaattgcactaaccaag 19241892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 43750136 - 43750190
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  43750136 atactcccttcgtttcaaaatacatgtccattttggagaaattggagtaaccaag 43750190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 198855 - 198908
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  198855 tactccctccgtttcaaaatacatgtccattttggagaaattgcactgaccaag 198908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 13702768 - 13702822
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||||||| ||| |||||||||| | ||||||||||||||||||||||||||    
T  13702768 atactccatccattttaaaatacatgcctattttggagaaattgcagtaaccaag 13702822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 46694387 - 46694334
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  46694387 tactccctccgtttcaaaatacatgtcctttttggagaaattgcactaatcaag 46694334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 19912217 - 19912174
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  19912217 aatactccctccgtttcaaaatacatgtccattttagagaaatt 19912174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 38806384 - 38806341
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  38806384 aatactccctccgtttcaaaatacatgtccattttagagaaatt 38806341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 48963155 - 48963199
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgc 114  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||    
T  48963155 atactccctccgtttcaaaatacatatctattttggagaaattgc 48963199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 245
Target Start/End: Original strand, 38805395 - 38805425
Alignment:
Q  215 ccaataccaataccaaaattaattaaattca 245  Q
    |||||||||||||||||||||||||||||||    
T  38805395 ccaataccaataccaaaattaattaaattca 38805425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 44276782 - 44276816
Alignment:
Q  78 tccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||||||||||||||||||||||| ||||||||    
T  44276782 tccgtttcaaaatacatgtccattttagagaaatt 44276816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 12095464 - 12095423
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||| |||||||||||||| ||||||||||| ||||||||    
T  12095464 tactccctccgtttcaaaatatatgtccattttagagaaatt 12095423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 19911693 - 19911722
Alignment:
Q  216 caataccaataccaaaattaattaaattca 245  Q
    ||||||||||||||||||||||||||||||    
T  19911693 caataccaataccaaaattaattaaattca 19911722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 21005556 - 21005527
Alignment:
Q  70 atactccatccgtttcaaaatacatgtcca 99  Q
    ||||||||||||||||||||||||||||||    
T  21005556 atactccatccgtttcaaaatacatgtcca 21005527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 23088208 - 23088155
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| || ||||||||||| ||||| |||||| |||||||||| ||||||||    
T  23088208 tactccctctgtttcaaaatatatgtctattttgaagaaattgcactaaccaag 23088155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 37293433 - 37293478
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||||||| ||||||||| ||||| ||||||||||| |||||||    
T  37293433 ataatactccctccgtttcacaatacttgtccattttgaagaaatt 37293478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 254 - 503
Target Start/End: Original strand, 3943541 - 3943790
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3943541 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa 3943640  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3943641 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 3943740  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943741 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 3943790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 254 - 503
Target Start/End: Original strand, 41959587 - 41959836
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |||||    
T  41959587 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttggaagagtgtatgagtaaatctacttaaaattgagtcaa 41959686  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41959687 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 41959786  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959787 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 41959836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 254 - 503
Target Start/End: Original strand, 9589409 - 9589658
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||    
T  9589409 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcaggagtaaatctacttaaaattaggtcaa 9589508  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||    
T  9589509 catttattagtggaaaataattattgtggagaaaatctagaattcaattaattggtagacaagggtaaaatagacaaaatgcatacttaaactatgaaat 9589608  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  9589609 ggatatgtattttgaaacaaaaaatttctctaaaatagacatgtattttg 9589658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 254 - 471
Target Start/End: Complemental strand, 13984664 - 13984447
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  13984664 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattggatcaa 13984565  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  13984564 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaacatgtatccttaaactatgaaat 13984465  T
Q  454 ggacatgtattttgaaac 471  Q
    ||| ||||||||||||||    
T  13984464 ggatatgtattttgaaac 13984447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 13985044 - 13984870
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13985044 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtctttg 13984945  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984944 atttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 13984870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 41959078 - 41959252
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959078 tactccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 41959177  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959178 atttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 41959252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 3943059 - 3943234
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtcttt 169  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  3943059 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctaatttgacacaaaagttcctattatacccttgtcttt 3943158  T
Q  170 gacttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943159 gatttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 3943234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 69 - 245
Target Start/End: Original strand, 9588668 - 9588844
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctt 168  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||    
T  9588668 aatactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaatctattttgacacaaaagttcctattatacccttgtctt 9588767  T
Q  169 tgacttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9588768 tgattttctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 9588844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 82 - 241
Target Start/End: Complemental strand, 44228270 - 44228112
Alignment:
Q  82 tttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccat 181  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||||| |||||||||||||| ||| | ||||| |||    
T  44228270 tttcaaaatacatgtccattttggagaaattgctgtaaccaaggacaagctagct-gacataaaagttcctattatacccttgttttttatttccttcat 44228172  T
Q  182 tttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaa 241  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||    
T  44228171 tttacatttatttaccccatctaataatcacttccaataccaataccaaatttaattaaa 44228112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 1168369 - 1168499
Alignment:
Q  79 ccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctc 178  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||    
T  1168369 ccgtttcaaaatacatgtcgtttttgaagaaattgcagtaaccaaggacaagctattttgacacaaaagttcatagtttacccttgtctttgatttcctc 1168468  T
Q  179 cattttacatttatttaccccatctcataatta 211  Q
    ||||||  ||||||||||||| |||||||||||    
T  1168469 catttt--atttatttaccccgtctcataatta 1168499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 389 - 503
Target Start/End: Complemental strand, 44227976 - 44227862
Alignment:
Q  389 tctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaa 488  Q
    ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||||| ||||    
T  44227976 tctagaatccaattagttggtatacaagggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgcattttgaaacaaaaaatttctccaaaa 44227877  T
Q  489 tggacatgtattttg 503  Q
    |||||||||||||||    
T  44227876 tggacatgtattttg 44227862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 46771635 - 46771690
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46771635 aatactctatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 46771690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 284333 - 284386
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  284333 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 284386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 23045556 - 23045503
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  23045556 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 23045503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 27211240 - 27211188
Alignment:
Q  72 actccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  27211240 actccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaag 27211188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 40783935 - 40783881
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  40783935 atactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaag 40783881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 47038127 - 47038085
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  47038127 tactccatccgtttcaaaatacatgtccattttggagaaattg 47038085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 321626 - 321679
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  321626 tactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaag 321679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 24772182 - 24772129
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  24772182 tactccctccgtttcaaaatacatgtccattttgaagaaattgcactaaccaag 24772129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 44227845 - 44227889
Alignment:
Q  68 taatactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  44227845 taatactccctccgtttcaaaatacatgtccattttggagaaatt 44227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 23526239 - 23526293
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  23526239 atactccttccatttcaaaatacatgttcattttggagaaattgcagtaatcaag 23526293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 41959854 - 41959809
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||    
T  41959854 ataatactccctccgtttcaaaatacatgtccattttagagaaatt 41959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 3943804 - 3943763
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  3943804 tactccctccgtttcaaaatacatgtccattttagagaaatt 3943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 9589673 - 9589631
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||    
T  9589673 atactccctccgtttcaaaatacatgtctattttagagaaatt 9589631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 40977486 - 40977516
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||||||||||||||||||||||||    
T  40977486 aatactccatccgtttcaaaatacatgtcca 40977516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 30003532 - 30003561
Alignment:
Q  70 atactccatccgtttcaaaatacatgtcca 99  Q
    ||||||||||||||||||||||||||||||    
T  30003532 atactccatccgtttcaaaatacatgtcca 30003561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 6766634 - 6766606
Alignment:
Q  68 taatactccatccgtttcaaaatacatgt 96  Q
    |||||||||||||||||||||||||||||    
T  6766634 taatactccatccgtttcaaaatacatgt 6766606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 25171417 - 25171389
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtc 97  Q
    |||||||||||||||||||||||||||||    
T  25171417 aatactccatccgtttcaaaatacatgtc 25171389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 36399098 - 36399126
Alignment:
Q  71 tactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||||||||||||||||||||||    
T  36399098 tactccatccgtttcaaaatacatgtcca 36399126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 254 - 503
Target Start/End: Complemental strand, 25059713 - 25059464
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  25059713 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctgcttaaaattgggtcaa 25059614  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25059613 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 25059514  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25059513 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 25059464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 254 - 503
Target Start/End: Complemental strand, 2911122 - 2910873
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  2911122 taattaggagtagttagttacgatgaattaaagtgcagtagtcattggaaaataattttttggaagagtgcatgagtaaatctacttaaaattgggtcaa 2911023  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2911022 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 2910923  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  2910922 ggacatgtattttgaaacaaaaaatttctttaaaatagacatgtattttg 2910873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 68 - 245
Target Start/End: Complemental strand, 25060189 - 25060012
Alignment:
Q  68 taatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtct 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25060189 taatactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtct 25060090  T
Q  168 ttgacttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25060089 ttgatttcctccattttacatttatttaccccatctcataattactctcaataccaataccaaaattaattaaattca 25060012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 70 - 245
Target Start/End: Complemental strand, 2911602 - 2911427
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtcttt 169  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  2911602 atactccctccatttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctaatttgacacaaaagttcctattatacccttgtcttt 2911503  T
Q  170 gacttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911502 gatttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 2911427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 27813808 - 27813864
Alignment:
Q  68 taatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  27813808 taatactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 27813864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 10981507 - 10981561
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  10981507 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 10981561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 40348960 - 40349013
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  40348960 tactccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 40349013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 25614628 - 25614576
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  25614628 tactccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaa 25614576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 36453399 - 36453348
Alignment:
Q  73 ctccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  36453399 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 36453348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 47110451 - 47110504
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  47110451 tactccctccatttcaaaatacatgtccattttggagaaattgcactaaccaag 47110504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 25059457 - 25059491
Alignment:
Q  78 tccgtttcaaaatacatgtccattttggagaaatt 112  Q
    |||||||||||||||||||||||||| ||||||||    
T  25059457 tccgtttcaaaatacatgtccattttagagaaatt 25059491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 32431357 - 32431386
Alignment:
Q  70 atactccatccgtttcaaaatacatgtcca 99  Q
    ||||||||||||||||||||||||||||||    
T  32431357 atactccatccgtttcaaaatacatgtcca 32431386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 28061511 - 28061543
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  28061511 ataatactccctccgtttcaaaatacatgtcca 28061543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 41898254 - 41898222
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  41898254 ataatactccctccgtttcaaaatacatgtcca 41898222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 42890605 - 42890577
Alignment:
Q  71 tactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||||||||||||||||||||||    
T  42890605 tactccatccgtttcaaaatacatgtcca 42890577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 47156293 - 47156261
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  47156293 ataatactccctccgtttcaaaatacatgtcca 47156261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 254 - 502
Target Start/End: Complemental strand, 34222321 - 34222073
Alignment:
Q  254 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgaataaatctacttaaaattgggtcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34222321 taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa 34222222  T
Q  354 catttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat 453  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  34222221 catttattagtggaaaataattattgtggagaaaatctaaaattcaattaattgatagacaagggtaaaatagacaaaatgtatccttaaattatgaaat 34222122  T
Q  454 ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtatttt 502  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34222121 ggacatgtattttgaaacaaaaaatttctataaaatggacatgtatttt 34222073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 34224431 - 34224257
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttg 170  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34224431 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtctttg 34224332  T
Q  171 acttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 245  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34224331 atttcctccattttacatttatttaccccatctcataattactcccaataccaataccaaaattaattaaattca 34224257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 1102503 - 1102556
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1102503 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 1102556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 3518906 - 3518961
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3518906 aatactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 3518961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 12970017 - 12969963
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  12970017 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 12969963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 23366790 - 23366842
Alignment:
Q  72 actccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  23366790 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 23366842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 37674014 - 37673961
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  37674014 tactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaag 37673961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 39938170 - 39938223
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  39938170 tactccctccgtttcaaaatacatgaccattttggagaaattgcactaaccaag 39938223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 13125138 - 13125173
Alignment:
Q  64 tgcataatactccatccgtttcaaaatacatgtcca 99  Q
    |||||| |||||||||||||||||||||||||||||    
T  13125138 tgcatattactccatccgtttcaaaatacatgtcca 13125173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 97
Target Start/End: Original strand, 24093068 - 24093099
Alignment:
Q  66 cataatactccatccgtttcaaaatacatgtc 97  Q
    ||||||||||||||||||||||||||||||||    
T  24093068 cataatactccatccgtttcaaaatacatgtc 24093099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 33607635 - 33607606
Alignment:
Q  70 atactccatccgtttcaaaatacatgtcca 99  Q
    ||||||||||||||||||||||||||||||    
T  33607635 atactccatccgtttcaaaatacatgtcca 33607606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 2183223 - 2183191
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  2183223 ataatactccctccgtttcaaaatacatgtcca 2183191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 5405262 - 5405230
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  5405262 ataatactccctccgtttcaaaatacatgtcca 5405230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 7608049 - 7608077
Alignment:
Q  71 tactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||||||||||||||||||||||    
T  7608049 tactccatccgtttcaaaatacatgtcca 7608077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 19361662 - 19361817
Alignment:
Q  86 aaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattatacccttgtctttgacttcctccatttta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  19361662 aaaatacatgtccattttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccatttta 19361761  T
Q  186 catttatttaccccatctcataattactcccaataccaataccaaaattaattaaa 241  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19361762 tatttatttaccccatctaataattactcccaataccaataccaaaattaattaaa 19361817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 306 - 503
Target Start/End: Original strand, 19362019 - 19362216
Alignment:
Q  306 taatttcttgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaat 405  Q
    |||||||| |||||||||||||| |||||| ||||||||||||||||||||||| | ||| ||||||||||||| |||||| ||||||||||||||||||    
T  19362019 taatttctagggagagtgcatgagtaaatccacttaaaattgggtcaacatttactggtgtaaaataattattgaggagaacatctagaatccaattaat 19362118  T
Q  406 tagtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttg 503  Q
    | |||||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  19362119 tggtagacaatggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgtattttacaacaaaaaatttctctaaaatggacatgtattttg 19362216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 314 - 482
Target Start/End: Original strand, 20543325 - 20543493
Alignment:
Q  314 tgggagagtgcatgaataaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattagtagac 413  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |    
T  20543325 tgggaaagtgcatgagtaaatccacttaaaattgggtcaacatttattaatggaaaataattattatggagaaaatctagaatccaattaattggtaggc 20543424  T
Q  414 aagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttct 482  Q
    ||||||| ||||||||||||||||||||||||||| |||  |||||||||||||||||||||| |||||    
T  20543425 aagggtagaatagacaaaatgtatccttaaactatcaaaatgacatgtattttgaaacaaaaactttct 20543493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 20541492 - 20541635
Alignment:
Q  102 ttggagaaattgcagtaaccaaggacaagctagtttgacacaaaagttcatattataccctt----gtctttgacttcctccattttacatttatttacc 197  Q
    |||||||||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||    |||||||| ||||||  |||||||||||||||||    
T  20541492 ttggagaaattgcattaaccaaggacaaactagttcgacacaaaagttcctattatacccttacttgtctttgatttcctctgttttacatttatttacc 20541591  T
Q  198 ccatctcataattactcccaataccaataccaaaattaattaaa 241  Q
     |||||||||||||||||  ||||||||| ||||| ||||||||    
T  20541592 tcatctcataattactcctgataccaatatcaaaactaattaaa 20541635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 24706526 - 24706471
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24706526 aatactccatccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 24706471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 21661816 - 21661759
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  21661816 ataatactccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaag 21661759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 21670580 - 21670523
Alignment:
Q  67 ataatactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  21670580 ataatactccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaag 21670523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 40122763 - 40122710
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 123  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40122763 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 40122710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 14261043 - 14261097
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  14261043 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 14261097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 21310424 - 21310478
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  21310424 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 21310478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 22321545 - 22321491
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  22321545 atactccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 22321491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 25704650 - 25704704
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  25704650 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 25704704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 12071560 - 12071613
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 123  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  12071560 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaa 12071613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 34324860 - 34324807
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  34324860 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 34324807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 44568836 - 44568889
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 123  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  44568836 atactccttccgtttcaaaatacatgtccattttgaagaaattgcactaaccaa 44568889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 19362233 - 19362189
Alignment:
Q  68 taatactccatccgtttcaaaatacatgtccattttggagaaatt 112  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||    
T  19362233 taatacttcatccgtttcaaaatacatgtccattttagagaaatt 19362189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 20249282 - 20249236
Alignment:
Q  78 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||||||||||||||||||||||||| |||||| | ||||||||    
T  20249282 tccgtttcaaaatacatgtccattttggataaattgtattaaccaag 20249236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 31892240 - 31892291
Alignment:
Q  73 ctccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||| ||||| ||||||||||||| ||||||  |||||||||||||||||||    
T  31892240 ctccctccgtatcaaaatacatgttcattttaaagaaattgcagtaaccaag 31892291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 47386285 - 47386314
Alignment:
Q  70 atactccatccgtttcaaaatacatgtcca 99  Q
    ||||||||||||||||||||||||||||||    
T  47386285 atactccatccgtttcaaaatacatgtcca 47386314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 169 - 123
Alignment:
Q  78 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  169 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 170 - 222
Alignment:
Q  71 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 123  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  170 tactccctccgtttcaaaatacatatccactttggagaaattgcagtaaccaa 222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 45453 - 45507
Alignment:
Q  70 atactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 124  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||    
T  45453 atactccctccgtttcaaaatacatgttcattttggagaaattgcaccaaccaag 45507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 71224 - 71194
Alignment:
Q  69 aatactccatccgtttcaaaatacatgtcca 99  Q
    |||||||||||||||||||||||||||||||    
T  71224 aatactccatccgtttcaaaatacatgtcca 71194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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