View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_21 (Length: 508)
Name: NF9133_low_21
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 491
Target Start/End: Original strand, 6002379 - 6002855
Alignment:
| Q |
15 |
tggtgtttctccataatcggatccttggtagcgcatgcatctccaatattttttcctttctattgtgcaaattttctggggacaaaaatagagttttgtt |
114 |
Q |
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| T |
6002379 |
tggtctttctccataatcggatccttggtagcgcatgcatctccaatattttttcctttcaattgtgcaaattttctagggacaaaaatagagttttgtt |
6002478 |
T |
|
| Q |
115 |
ttggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgcaagccaaattattattcacacacccatgtattttgcc |
214 |
Q |
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| T |
6002479 |
ttggaaaaagctatttacagcgagaagttttctcgcgacaacaccacgaggcgtactgcatgcaagccaaattattattcacacacccatgtattttgcc |
6002578 |
T |
|
| Q |
215 |
cacaacccatgaattgttccaaaatgcagatctagcggtgctggtactttcgtgggttattcgtgaacttggctccgctgtatatagcaaagctcttttg |
314 |
Q |
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| T |
6002579 |
cacaacccatgaattgtgccaaaatgcagatatagcggtgctagtactttcgtgggttattcgtgaacttggctccgctgtatatagcaaagctcttttg |
6002678 |
T |
|
| Q |
315 |
tttttcatattttctttcctcaatgtctttgtattctttcgtgcacaacaagtatcccttgagtaaccaatagcattgacacagg-nnnnnnnngtgagt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
6002679 |
tttttcatattttctttcctcaatgtctttgtattctttcgtgcacaacaagtatcccttgagtaaccaatagca-tgacacaggaaaaaaaaagtgagt |
6002777 |
T |
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| Q |
414 |
ctttcatattgtatatccttattaaaagcatagccatctcgttcaacaagaaggaattcttgcagatcaagatccact |
491 |
Q |
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| T |
6002778 |
ctttcatattgtatatccttattaaaagcatagccatctcgttcaacaagaaggaattcttgcagatcaagatccact |
6002855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 117 - 269
Target Start/End: Original strand, 32188249 - 32188401
Alignment:
| Q |
117 |
ggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgcaagccaaattattattcacacacccatgtattttgccca |
216 |
Q |
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||||||| ||||| | |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32188249 |
ggaaaaaactatttacagcgagaagttttctcgcgacaacaccacgacgcatactgcatgcaagccaaattattattcacacacccatgtattttgccta |
32188348 |
T |
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| Q |
217 |
caacccatgaattgttccaaaatgcagatctagcggtgctggtactttcgtgg |
269 |
Q |
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| T |
32188349 |
ccacccatgaattgtgccaaaatgcagatctaacggtgctagtacttttgtgg |
32188401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 117 - 310
Target Start/End: Complemental strand, 27645868 - 27645675
Alignment:
| Q |
117 |
ggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgcaagccaaattattattcacacacccatgtattttgccca |
216 |
Q |
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| T |
27645868 |
ggaaaaagctatgtatagcgaaaagttttctcgcgacaacaccatgacgtgtactgtattcaagcctagttattattcacacccccatgtatttagccaa |
27645769 |
T |
|
| Q |
217 |
caacccatgaattgttccaaaatgcagatctagcggtgctggtactttcgtgggttattcgtgaacttggctccgctgtatatagcaaagctct |
310 |
Q |
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| T |
27645768 |
ccactcatgcattgtgccaaaacgcagatcttacggttctagtgctttcgtgggttatttgtgaatttggcttcgctacatatagcaaagctct |
27645675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 44833533 - 44833621
Alignment:
| Q |
191 |
attcacacacccatgtattttgcccacaacccatgaattgttccaaaatgcagatctagcggtgctggtactttcgtgggttattcgtga |
280 |
Q |
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| T |
44833533 |
attcacgcactcatgtattttgccaaccactcatgcattgtgccaaaacgcagatct-taggtgctagtgctttcgtgggttattcgtga |
44833621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 31034300 - 31034371
Alignment:
| Q |
319 |
tcatattttctttcctcaatgtctttgtattctttcgtgcacaacaagtatcccttgagtaaccaatagcat |
390 |
Q |
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| T |
31034300 |
tcatattttctttccttggtgcctttgtattcttttgtgcacgacagttatcccttgagtgatcaatagcat |
31034371 |
T |
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