View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_24 (Length: 493)
Name: NF9133_low_24
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 34216218 - 34216691
Alignment:
| Q |
1 |
gtatgctactgcagtaaccaaatccaacacggggctagtgagctgaggcaaccttccctttggaatttcatctataacatattgcaaggcaaggttgaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216218 |
gtatgctactgcagtaaccaaatccaacacggggctagtgagctgaggcaaccttccctttggaatttcatctataacatattgcaaggcaaggttgaac |
34216317 |
T |
|
| Q |
101 |
gaattggtggaaacatccgtttgtgatttactgagttgggcaagcgagggactcatctccgtaacagaagcagaaacagtaaactcagagttctcatgca |
200 |
Q |
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| T |
34216318 |
gaattggtggaaacatccgtttgtgatttactgagttgggcaagcgagggactcatctccttaacagaagcagaaacagtaaactcagagttctcatgca |
34216417 |
T |
|
| Q |
201 |
cgttgacgtgctcaactgaagaggggagccgaacagcagcgacagaagtcccaagaactcttacgttccgagaatcctgtggcattttctctactccctg |
300 |
Q |
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| T |
34216418 |
cgttgacgtgctcaactgaagaggggagccgaacggcagcgacagaagtcccaagaactcttacgttccgagaatcctgtggcattttctctactccctg |
34216517 |
T |
|
| Q |
301 |
tgaatgcacgtcatcgtgtgctacctcggaaaccaattccaactcgggactagcggagtgaggaaaccttccctgtggaatttcatctgtaacattctgc |
400 |
Q |
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| T |
34216518 |
tgaatgcacgtcatcgtgtgctacctcggaaaccaattccaactcgggactagcggagtgaggaaaccttccctgtggaatttcatctgtaacattctgc |
34216617 |
T |
|
| Q |
401 |
aatgtcaagctgaaagagttggcagaaacatcattaagtggtgtagaagagagtgtctgttcttgcaacagaga |
474 |
Q |
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| T |
34216618 |
aatgtcaagctgaaagagttggcagaaacatcattaagtggtgtagaagagagtgtctgttcttgcaacagaga |
34216691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 137 - 395
Target Start/End: Original strand, 34216038 - 34216297
Alignment:
| Q |
137 |
tgggcaagcgagggactcatctccgtaacagaagcagaaacagtaaactcagagttctcatgcacgttgacgtgctcaactgaagaggggagccgaacag |
236 |
Q |
| |
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||||| |||||||||||||||| | |||||||||| || | || ||||| | ||||||||||||| |||||||| | |||| ||| ||| |||||| |
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| T |
34216038 |
tgggccagcgagggactcatctacctaacagaagcggagagagctaactcggcattctcatgcacgtcaacgtgctctattgaaaaggtaagcggaacag |
34216137 |
T |
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| Q |
237 |
cagcgacagaagtcccaagaactcttacgttccgagaatcctgtg-gcattttctctactccctgtgaatgcacgtcatcgtgtgctacctcggaaacca |
335 |
Q |
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| T |
34216138 |
cagctacagaagtctctagaacgctcgtgtcctgagaatcctgaaagtgtttgctccactacatttgaatgcacgtcatcgtatgctactgcagtaacca |
34216237 |
T |
|
| Q |
336 |
attccaactcgggactagcggagtgaggaaaccttccctgtggaatttcatctgtaacat |
395 |
Q |
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| T |
34216238 |
aatccaacacggggctagtgagctgaggcaaccttccctttggaatttcatctataacat |
34216297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 427
Target Start/End: Complemental strand, 19552380 - 19552189
Alignment:
| Q |
233 |
acagcagcgacagaagtcccaagaactcttacgttccgagaatcctgtggcattttctctactccctgtgaatgcacgtcatcgtgtgctacctcggaaa |
332 |
Q |
| |
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||||||||| ||||| || ||||||| |||| ||||||| |||||| | ||| || ||||| |||||||||||||||| ||| ||||| || || |
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| T |
19552380 |
acagcagcggcagaaatctcaagaacctgtacggtccgagagtcctgttgtgtttgttccactccatgtgaatgcacgtcattgtgcgctacttcaga-- |
19552283 |
T |
|
| Q |
333 |
ccaattccaactcgggactagcggagtgaggaaaccttccctgtggaatttcatctgtaacattctgcaatgtcaagctgaaagagttggcagaa |
427 |
Q |
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||| || ||| |||||||| | ||||| |||||||| || || ||||||||||||||||| ||||| | |||||||| |||||||||||| |
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| T |
19552282 |
-caactctaacatgggactagaagcctgaggtaaccttccttgagggatttcatctgtaacattttgcaacgcaaagctgaacgagttggcagaa |
19552189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 429
Target Start/End: Original strand, 27457810 - 27457937
Alignment:
| Q |
299 |
tgtgaatgcacgtcatcgtgtgctacctcggaaaccaattccaactcgggactagcggagtgaggaaaccttccctgtggaatttcatctgtaacattct |
398 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| || |||||| | |||||| ||| ||||| |||||||| || || |||||||| ||||||| | |
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| T |
27457810 |
tgtgaatgcacgtcatcgtgcgctacttcgga---cagctccaacacaggactaacggcctgaggtaaccttccttgagggatttcatccataacattat |
27457906 |
T |
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| Q |
399 |
gcaatgtcaagctgaaagagttggcagaaac |
429 |
Q |
| |
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|||||| |||||||| |||||||| ||||| |
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| T |
27457907 |
gcaatgcaaagctgaacgagttggcggaaac |
27457937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 21565119 - 21565079
Alignment:
| Q |
303 |
aatgcacgtcatcgtgtgctacctcggaaaccaattccaac |
343 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
21565119 |
aatgcacgtcatcgtgggctacctcggaaaccaattccaac |
21565079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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