View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9133_low_26 (Length: 474)
Name: NF9133_low_26
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 19751755 - 19751315
Alignment:
| Q |
18 |
tgttccgatatttgtccgcattgcgnnnnnnnctatcaaaatgactggcatgtgtttattggatgtgatgaggcaaattgagtttggcaagaggcggggg |
117 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | |
|
|
| T |
19751755 |
tgttctgatatttgtccgcattgcgaaaaaaactatcaaaatgactggcatgtgtttattggatgtgatgaggcaaatcgagtttgacaagaggcgggtg |
19751656 |
T |
|
| Q |
118 |
tgtgggatattatacatgatggagctgctagtcttgcagcgtgtctgttctcnnnnnnnngtgtgcagatttccggaaaatgtttgtaacgaaatagcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19751655 |
tgtgggatattatacatgatggagctgctagtcttgcagcgtgtctgttgtcttttttttttgtgcagatttccggacaatgtttgtaacgaaatagcaa |
19751556 |
T |
|
| Q |
218 |
tgatgctatggtgcatttggcgtcgaaggaacaacaaagcattgggagacagaacaacagcgtatccgatcagttgagtaaatgacacaggattctttgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19751555 |
tgatgctatggtgcatttggcgtcgaaggaacaacaaagcat-gggagacagaacaacagcgtatccgatcagttgagtaaatgacacaggattctttgt |
19751457 |
T |
|
| Q |
318 |
tgcaatggcatccccaattgcccgaatagcagagcaacagccagcaggaggtgcgatggcagccaccgttagacgggtatgtgaagtacaatattgatgc |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19751456 |
tgcaatggcatccccaattgcccgaacagcagcgcaacagccagcaggaggtgcgatggcagccaccgttagacgggtatgtgaagtaaaatattgatgc |
19751357 |
T |
|
| Q |
418 |
ggcattatttcgtgatcaacaatgttttggaattggaatatg |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19751356 |
ggcattatttcgtgatcaacaatgttttggaattagaatatg |
19751315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 50 - 458
Target Start/End: Original strand, 19595682 - 19596083
Alignment:
| Q |
50 |
ctatcaaaatgactggcatgtgtttattggatgtgatgaggcaaattgagtttggcaagaggcgggggtgtgggatattatacatgatggagctgctagt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19595682 |
ctatcaaaatgactggcatgtgtttattggatgtgatgaggcaaatcaagtttgg-aagaggcgggtgtgtgggatattatacatgatggagctgctagt |
19595780 |
T |
|
| Q |
150 |
cttgcagcgtgtctgttctcnnnnnnnngtgtgcagatttccggaaaatgtttgtaacgaaatagcaatgatgctatggtgcatttggcgtcgaaggaac |
249 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
19595781 |
cttgcaatgtgtctgctctcttttt----tgtgcagattttcggacaatgtttgcaacgaaatagcaatgatgctatgatgcatttggcgtcaaaggaac |
19595876 |
T |
|
| Q |
250 |
aacaaagcattgggagacagaacaacagcgtatccgatcagttgagtaaatgacacaggattctttgttgcaatggcatccccaattgcccgaatagcag |
349 |
Q |
| |
|
||||||| | |||||||| |||||||| ||||||||||||| ||||| | ||||||||||||||||||||||| ||||||| | | ||| ||||| |
|
|
| T |
19595877 |
aacaaagtgt-gggagacaaaacaacaggctatccgatcagtttttcaaatggcgcaggattctttgttgcaatggcagccccaatagtcagaacagcag |
19595975 |
T |
|
| Q |
350 |
agcaacagccagcaggaggtgcgatggcagccaccgttagacgggtatgtgaagtacaatattgatgcggcattatttcgtgatcaacaatgttttggaa |
449 |
Q |
| |
|
|| |||||||||||||||||||||| |||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19595976 |
cgcggcagccagcaggaggtgcgatgg-agccactgttgggcgggtatgtgaagtacaatattgatgcggcattttttcgtgatcaacaatgttttggaa |
19596074 |
T |
|
| Q |
450 |
ttggaatat |
458 |
Q |
| |
|
||||||||| |
|
|
| T |
19596075 |
ttggaatat |
19596083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 450
Target Start/End: Original strand, 4097487 - 4097542
Alignment:
| Q |
395 |
tatgtgaagtacaatattgatgcggcattatttcgtgatcaacaatgttttggaat |
450 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
4097487 |
tatgtgaagtgtaatctagatgcggcattatttggtgatcaacaatgctttggaat |
4097542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 453
Target Start/End: Complemental strand, 9179267 - 9179167
Alignment:
| Q |
353 |
aacagccagcaggaggtgcgatggcagccaccgttagacgggtatgtgaagtacaatattgatgcggcattatttcgtgatcaacaatgttttggaattg |
452 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| || |||| |||||||| |||||||| || || ||||| | ||||||||||| ||| |||||| |
|
|
| T |
9179267 |
aacaaccagcatgaggtgcgatggcagccaccgttggatgggtgtgtgaagtgtaatattgacgcaacactatttggggatcaacaatgctttagaattg |
9179168 |
T |
|
| Q |
453 |
g |
453 |
Q |
| |
|
| |
|
|
| T |
9179167 |
g |
9179167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University