View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_28 (Length: 455)
Name: NF9133_low_28
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 126 - 436
Target Start/End: Complemental strand, 10688446 - 10688144
Alignment:
| Q |
126 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttagatagtgaacccagaatgtgaatctga |
225 |
Q |
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| T |
10688446 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttaggtagtgaacccagaatgtgaatctga |
10688347 |
T |
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| Q |
226 |
ctgatcaaaaagtagtatttataggcatagaaaattattactattactttgagaaaacatttttcagaaaagttggggaatgaggaaagtgtatggaaaa |
325 |
Q |
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| T |
10688346 |
ttgatcaaaaagtagtatttataggcatagaaaattattactattactatgagaaaacatttttcagaaaagttggggaat--------tgtatggaaaa |
10688255 |
T |
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| Q |
326 |
tatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatcc |
425 |
Q |
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| T |
10688254 |
tatacaaggagaataattgtgcaagtgttgtgggattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatgc |
10688155 |
T |
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| Q |
426 |
ttgatcaactc |
436 |
Q |
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| T |
10688154 |
ttgatcaactc |
10688144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 10688585 - 10688550
Alignment:
| Q |
18 |
gtttggttatggttaatcatatttctcgttttaaaa |
53 |
Q |
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| T |
10688585 |
gtttggttatggttaatcatatttctcgttttaaaa |
10688550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 281 - 436
Target Start/End: Complemental strand, 5445011 - 5444855
Alignment:
| Q |
281 |
aacatttttcagaaaagttggggaatgaggaaagtgtatggaaaatatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaact |
380 |
Q |
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| T |
5445011 |
aacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattgggcaagtgttgagggattggcaatttccaaagaact |
5444912 |
T |
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| Q |
381 |
tgaactgaggtt-cttgatttggcaatttccaatattcatagatccttgatcaactc |
436 |
Q |
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| T |
5444911 |
tggactgaggttgagggatttggcaatttcccatattcattgatccttgatcaactc |
5444855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 5445069 - 5445016
Alignment:
| Q |
201 |
tagtgaacccagaatgtgaatctgactgatcaaaaagtagtatttataggcata |
254 |
Q |
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| T |
5445069 |
tagtgaaccgagaatatggatctgattgatcaaaaggtagtttttataggcata |
5445016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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