View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_30 (Length: 438)
Name: NF9133_low_30
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 214 - 422
Target Start/End: Complemental strand, 26953980 - 26953772
Alignment:
| Q |
214 |
aataatacttcctataatttccatctctcacgagcaggtcctgccacggttgtttgtgattacatgaccttaacgttcatgtttctgtcagttgttacat |
313 |
Q |
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| T |
26953980 |
aataatacttcatataatttccatctctcacgagcaggtcctgccacggttgtttgtgattacatgaccttaacgttcatgtttctgtcagttgttacat |
26953881 |
T |
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| Q |
314 |
ccaatataattgctactgcccttgctaaacaggttagtttcttctatctggtctaagagcaatattttccctcattttttcccacatacatgcaatgata |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26953880 |
ccaatataattgctactgcccttgctaaacaggttagtttcttctatctggtctaagagcaatattttccctcattttttcccacatacatgcaatgata |
26953781 |
T |
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| Q |
414 |
tcttgtatg |
422 |
Q |
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||||||||| |
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| T |
26953780 |
tcttgtatg |
26953772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 26954181 - 26954078
Alignment:
| Q |
16 |
actacttatgttttttaaaattattagcagtgtttgtgtgttggtaatagtatcgacgttaatgatgtgttggatgtatatatctttgctttcgcagatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26954181 |
actacttatgttttttaaaattattagcagtgtttgtgtgttggtaatagtatcgacgttaatgatgtgtcggatgtatatatctttgctttcgcagatt |
26954082 |
T |
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| Q |
116 |
gcaa |
119 |
Q |
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|||| |
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| T |
26954081 |
gcaa |
26954078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 349
Target Start/End: Complemental strand, 26946347 - 26946245
Alignment:
| Q |
247 |
gcaggtcctgccacggttgtttgtgattacatgaccttaacgttcatgtttctgtcagttgttacatccaatataattgctactgcccttgctaaacagg |
346 |
Q |
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||||||||||| || ||||||||||||||||||| || ||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||||| |
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| T |
26946347 |
gcaggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
26946248 |
T |
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| Q |
347 |
tta |
349 |
Q |
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||| |
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| T |
26946247 |
tta |
26946245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 26991232 - 26991171
Alignment:
| Q |
292 |
atgtttctgtcagttgttacatccaatataattgctactgcccttgctaaacaggttagttt |
353 |
Q |
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||||||||||| ||| ||| || ||||| |||||||||||||||||||||||||| |||| |
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| T |
26991232 |
atgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaacaggtttgttt |
26991171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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