View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_32 (Length: 425)
Name: NF9133_low_32
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_32 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 179 - 425
Target Start/End: Complemental strand, 32094499 - 32094255
Alignment:
| Q |
179 |
cactggatcaatgagaatttcccctctataaaggtcttttttcctgttacaagtcaaacatatcaaaaagaaatgtttccttaaaacattacaaatctat |
278 |
Q |
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| T |
32094499 |
cactggatcaatgagaatttcccctctataaaggtcttttttcctgttacaagtcaaacatat-aaaaagaaatgtttccttaaaacattacaaatctat |
32094401 |
T |
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| Q |
279 |
agacttgacctaatatccaaaatctgtcnnnnnnnnncaaatttccaatcnnnnnnnctcaccaaccgaccatattgacttttagaaccaaacagtgaat |
378 |
Q |
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| T |
32094400 |
agaattgacctaatatccaaaatctgtcaaaaaaaatcaaatttccaatc-ttttttctcaccaaccaaccatattgacttttagaaccaaacagtgaat |
32094302 |
T |
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| Q |
379 |
aatcaaaatcaaatctcagaaattttttccaaataattcaaattaaa |
425 |
Q |
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| T |
32094301 |
aatcaaaatcaaatctcagaatttttttccaaataattcaaattaaa |
32094255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 32094663 - 32094554
Alignment:
| Q |
13 |
cacagatcaaagcaaactataaaaacatctgaacagaaaatcggattatttcactaaatctacagtcacaaaggcctaatagttcatgtttcatatcttt |
112 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32094663 |
cacagatcaaagcaaattataaaaatatctgaacagaaaatcggattatttcactaaatctacagtcacaaaggcctaatagttcatgtttcatatcttt |
32094564 |
T |
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| Q |
113 |
accgataacc |
122 |
Q |
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| T |
32094563 |
accgataacc |
32094554 |
T |
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