View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9133_low_33 (Length: 423)
Name: NF9133_low_33
Description: NF9133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9133_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 1705755 - 1706161
Alignment:
| Q |
1 |
ttgtaagaaagaaggtcattatttgcacacttggttttagagatcaaccagcccatgagggtagaatttgagcatatgaatgcttggacaaacattggat |
100 |
Q |
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| T |
1705755 |
ttgtaagaaagaaggtcattatttgcacacttggttttagagatgaaccagcccataagggtagaatttgagcatatgaatgattggacaaacattggat |
1705854 |
T |
|
| Q |
101 |
tcttgagcagtcgagatattatattggcatagaattgtgagagtgagacatgagtgaatttttcatccgcaaggatgataaaagtgaggttaggcattgt |
200 |
Q |
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| T |
1705855 |
tcttgagcagtcgagatattatattggcatagaattgtgagagtgagacatgaatgaatttttcatccgcaaggatgataaaagtgaggttaggcattgt |
1705954 |
T |
|
| Q |
201 |
tgggatttctcaatgttcaccaaaaacaacgaattgaagttcttttccatattgctcttggagaacagttgtgaattgatggtaaaaagc-tttttgaaa |
299 |
Q |
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| T |
1705955 |
tgggatatctcaatgttcaccaaaaacaacgaattgaagttcttttccatattgctcttggagaacagttgtgaattgatggtaaaaagcttttttgaaa |
1706054 |
T |
|
| Q |
300 |
gtgagtctaaccatgttcgattcttagaagagtagttttgctactagctaaaagaaaaagtagctcacatgcaagaagcaagacaaaaataggtttataa |
399 |
Q |
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| T |
1706055 |
gtgagtctaaccatgttcgattctta-aagagtagttttgctactagctaaaagaaaaagtagctcacatgcaagaagcaagacaaaaataggtttataa |
1706153 |
T |
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| Q |
400 |
gaattaat |
407 |
Q |
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| T |
1706154 |
gaattaat |
1706161 |
T |
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